v0.19.0

Eleanor v0.19.0

Summary

v0.19.0 is a major architectural release. The plugin system has been overhauled to use Python entry points, making all executors, kernels, navigators, output sinks, and CLI commands fully discoverable without hard-coded imports. The CLI has been migrated from argparse to Click, gaining shell completion and a more consistent command hierarchy. The Postgres output layer has been rewritten on psycopg3 with per-batch transactions and savepoint-per-point error isolation. Eleanor itself is now an optional context manager that can reuse resources across multiple runs. Several long-standing internal concepts have been renamed or removed to clarify the API surface: Sailor → Runner, Boatswain → PointBuilder, *Exception → *Error, and the suborder, Huffer, and order-transformer features have been dropped entirely.

NOTE: This is a massive change that likely includes a number of bugs and issues. We decided to get these changes out now and hope that you will report any issues and contribute to discussions over here 👉 #188.

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What's New

Eleanor Query Language (EQL)

A typed, consumer-agnostic query language for filtering and projecting simulation results. Any output sink (Postgres, CSV, memory, etc.) or navigator feedback logic can consume the same query.

Database Migration System

eleanor postgres migrate applies versioned schema migrations automatically on each run.

New Output Sinks

csv, memory, and null sink types are now built in alongside the existing postgres sink.

New CLI Commands & Flags

• eleanor doctor — prints install and plugin diagnostics.
• eleanor gen config|order — emits starter config and order templates in YAML, TOML, or JSON.
• eleanor postgres — groups bulkload drop/recreate, schema verify/scratch, and migrate under a single subcommand.
• --null-sink — discards all writes for a run without editing the config file.
• --max-nav-attempts — controls navigator retry count per point.
• --(no-)bulk-load — enables/disables Postgres bulk-load mode (drops secondary indexes during ingestion, recreates at finalize) for a single run.
• --order-id — resumes or extends an existing order row in the database.

Other Additions

• ELEANOR_EQ36_DATA1_DIR environment variable for setting the EQ3/6 data directory without a config file.
• Multiple tags per order (stored as a JSON array).
• Navigator-owned batching with retry logic wired to --max-nav-attempts.
• LinearConstraint built-in constraint type.
• Separate tqdm progress bars for kernel execution and output writes.
• Plugin versioning with compatibility validation at load time.
• Kernel.get_molar_mass and Kernel.get_atomic_weight interface methods.
• Order.volume property and water_mass order field.
• Graceful SIGINT/SIGTERM shutdown — flushes in-flight results before exit.
• CombinedReactant replaces GlassReactants, with optional fraction-proportional rate support.
• min_log_activity, min_log_molality, and write_unformed settings for the Postgres sink.
• error column in the variable_space table for failed simulation points.
• Comprehensive database indices on the Postgres schema.
• EleanorWarning base class for non-fatal warnings.
• Backtraces always printed on error in eleanor run.
• Reactant fractions can now be ValueParameter instances.
• @config_options decorator is now parameterizable with required.

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Breaking Changes

Renames

• Sailor → Runner; Boatswain → PointBuilder.
• All *Exception classes renamed to *Error (e.g. EleanorException → EleanorError, Eq36Exception → Eq36Error).

API Changes

• CLI migrated to Click — all commands and flags have changed; shell completion available via _ELEANOR_COMPLETE.
• Plugin system now uses Python entry points — plugins must register via project.entry-points in pyproject.toml.
• Eleanor is now an optional context manager — resources are reused across run calls inside a with block; single-shot usage still works without one.
• Executor lifecycle is now caller-owned — Eleanor no longer tears down an executor passed at construction time.
• All Eleanor.__init__ arguments are now keyword-only.
• Eleanor.run now accepts kernel arguments directly rather than via a wrapper.
• ConstraintConfig, NavigatorConfig, and OutputConfig moved to dedicated modules.
• Config refactored; per-subsystem config classes are loaded independently.
• Parameter.name retired; names are managed at the VariableSpace level.
• load_executor, load_navigator, and load_output_sink interfaces redesigned for consistency.
• TypedDicts at interface boundaries replaced with typed **kwargs (Unpack).
• Obscure equilibrium-space scalar properties moved from top-level columns into a custom_properties JSONB column.
• Stoichiometric ionic asymmetry now stored in place of log_activity / log_molality values.
• data1_dir now accepts str | Path.
• Multiprocessing executor replaced busy-polling with a queue-draining implementation.
• Switched to absolute imports throughout; scipy imports are now deferred.
• Transitioned to np.float64 throughout the kernel layer.

Removed Features

• Suborder feature — use separate orders instead.
• Huffer — removed entirely.
• GlassReactantEmbedder — superseded by CombinedReactant.
• Order Transformers — removed entirely.
• Success-sampling support — removed.
• Parameter.type property.
• parallel kwarg from Eleanor.run.
• Per-run executor support — executor is now session-scoped.
• id fields from Order, VariableSpace, and EquilibriumSpace dataclasses — moved into the output layer.
• mypy, pylsp-mypy, and maccabe removed as dev dependencies; replaced by basedpyright.

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Bug Fixes

• Fixed always-true condition in kernel model-type check that silently accepted invalid states.
• Fixed infinite recursion in certain kernel code paths.
• Fixed incorrect exit code detection when kernel returned a soft-exit code.

Full Changelog: v0.18.2...v0.19.0