Fix(python) import_petab_problem: Add absolute paths to python path, invalidate caches and reload#970
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## develop #970 +/- ##
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Coverage 71.86% 71.86%
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Files 52 52
Lines 8391 8391
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Hits 6030 6030
Misses 2361 2361
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FFroehlich
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dweindl
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Release 0.10.20 --- Merge pull request #1014 from ICB-DCM/release_0.10.20 * Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994) * Fixed sensitivities for parameters in sigma expressions for Python/SBML in case provided expression was not just a single parameter ID * Enable parallel compilation of model files from Python (#997) based on AMICI_PARALLEL_COMPILE enviroment variable * Fixed computation of log-likelihood for log10-normal distributed noise * Added `reinitializeFixedParameterInitialStates` to ExpData (#1000) (**breaking change**: overrides settings in `amici::Model`) * Python model import now verifies that chosen model name is a valid identifier (Closes #928) * Made w available in ReturnData (Closes #990) (#992) * Fixed setting of log level when passing boolean values to verbose (#991) * Documentation now on ReadTheDocs https://amici.readthedocs.io/en/ * Use proper state/observable names in plotting functions (#979) * PEtab support: * Adapt to most recent PEtab (0.1.5) * Extended support for import of PEtab models * Added support for computing cost function based on PEtab problem * Implemented handling of species in condition table * petab_import.import_model now provides reproducible parameter list (Closes #976) * Fix python import error in import_petab_problem: Add absolute paths to python path, invalidate caches and reload (#970) * Added example notebook * CI: PEtab test suite integrated in CI workflow * Added AMICI dockerfile and image deployment to dockerhub (#948) * Removed mention of 'mex' in warning/error ids (#968) * More informative errors on SWIG interface import failures (#959)
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…Closes #965)