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The number of threads to be used in the Rcpp functions can be set using the nThreads variable in R. It defaults to 0, which means use all available but this could be changed easily if some other default is preferred, e.g. 1. Also, it will never use more threads than the maximum available.

@doddsk doddsk merged commit 9864f61 into AgResearch:master Aug 31, 2018
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