Skip to content

v0.1.0 Initial release

Choose a tag to compare

View all tags
@jashapiro jashapiro released this 26 Jul 14:17
· 517 commits to main since this release
v0.1.0
0287433
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.
  • Initial versioned release of the OpenScPCA-nf Nextflow workflow
  • Current modules:
    • example: a very small test module for testing configuration parameters
    • simulate-sce: creates simulated and permuted data for testing here and in OpenScPCA-analysis
    • merge-sce: merges multiple datasets into a single SCE object and corresponding AnnData objects
    • doublet-detection: runs scDblFinder to detect doublets in a dataset
  • The default workflow entrypoint currently runs the merge-sce and doublet-detection modules. Other workflow entrypoints are:
    • test to run the example module
    • simulate to run the simulate-sce module
  • Includes scripts for running the workflow on AWS batch through Code Deploy
Assets 2
Loading