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Merged
merged 52 commits into from
Jan 19, 2023
Merged

Dev #134

merged 52 commits into from
Jan 19, 2023

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@rcpeene
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@rcpeene rcpeene commented Jan 19, 2023

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rcpeene added 30 commits December 19, 2022 14:34
@rcpeene
Adding beginning of unit metrics and unit waveform notebooks.
8d43d84
@rcpeene
Merge branch 'dev' of https://github.com/AllenInstitute/openscope_dat…
06522c9 
…abook into unit_metrics
@rcpeene
Incremental additions
fa425b9
@rcpeene
Made progress with displaying spike times
c79c62d
@rcpeene
Removed visualize_unit_waveform from this branch. Will be tracked on …
2cab869 
…another branch
@rcpeene
Finalized visualize_unit_metrics. Ready for review
2b3c10c
@rcpeene
Merge branch 'dev' of https://github.com/AllenInstitute/openscope_dat…
e3852f6 
…abook into unit_metrics
@rcpeene
Update build.yml
5293179
@rcpeene
Moved visualize_unit_waveform here from other branch
e09a6c7
@rcpeene
Renamed file
d0dabff
@rcpeene
Added code to extract epochs from stimulus table.
18d01d9
@rcpeene
Added disclaimer to notebook that it currently doesnt work on remote …
ffa341a 
…locations
@rcpeene
Merge branch 'main' of https://github.com/AllenInstitute/openscope_da…
d122a8e 
…tabook into neuropixel_probes
@rcpeene
Changed filename in eye tracking notebook for new convention
671c29c
@rcpeene
Changed 2p raw filename for new convention
8043232
@rcpeene
Merge branch 'main' of https://github.com/AllenInstitute/openscope_da…
50ae58e 
…tabook into dev
@rcpeene
Merge pull request #121 from AllenInstitute/neuropixel_probes
b8d8f7d 
Neuropixel probes
@rcpeene
Changed notebook to use streaming, fix typo, included output cells
339a2aa
@rcpeene
Merge branch 'unit_metrics' of https://github.com/AllenInstitute/open…
b254523 
…scope_databook into unit_metrics
@rcpeene
Change import namespace
b6f84f8
@rcpeene
Merge pull request #122 from AllenInstitute/2p_raw
f33a478 
2p raw
@rcpeene
Added completed unit responses notebook with output. Now its ready fo…
24884e7 
…r review
@rcpeene
Merge branch 'dev' of https://github.com/AllenInstitute/openscope_dat…
c0a3540 
…abook into unit_responses
@rcpeene
Removed extraneous import
89b666b
@rcpeene
Changed filepath once more, since dandi filenames were changed
8fabfe4
@rcpeene
Merge branch 'dev' of https://github.com/AllenInstitute/openscope_dat…
561d464 
…abook into unit_responses
@rcpeene
Merge branch 'main' of https://github.com/AllenInstitute/openscope_da…
b530481 
…tabook into dev
@rcpeene
Issue #119, updated reference in exploring an nwb file
6b2e5a2
@rcpeene
Created visualize_2p_responses notebook as duplicate of visualize_uni…
b2bd64a 
…t_responses. Has yet to be significantly modified
@rcpeene
Turned off authentication code, as it is not needed for visual coding…
e9f87aa 
… files
rcpeene added 22 commits January 11, 2023 10:18
@rcpeene
Add stimulus table extraction to notebook
05ba2de
@rcpeene
Changed back to download and changed files to use illusion rather tha…
22fc999 
…n visual coding
@rcpeene
Reorganized notebook. Fixed some typos and one bug with extracting ep…
6850a0a 
…ochs
@rcpeene
Merge branch 'unit_responses' into 2p_responses
54fda9c
@rcpeene
Update visualize_unit_responses.ipynb
588014d
@rcpeene
Organized some code, retailored first few sections for 2p data
e9e1dda
@rcpeene
Variable name and markdown changes
362f136
@rcpeene
Merge branch 'unit_responses' of https://github.com/AllenInstitute/op…
5f5a4db 
…enscope_databook into unit_responses
@rcpeene
Small text changes
0656af5
@rcpeene
typo fix
f5397ef
@rcpeene
Completed epoch plot for 2p data
5197587
@rcpeene
Completed 2p responses notebook
9ad58d7
@rcpeene
Merge pull request #120 from AllenInstitute/unit_metrics
c6324f3 
Unit metrics
@rcpeene
Merge pull request #123 from AllenInstitute/unit_responses
ffe7459 
Unit responses
@rcpeene
Changed notebook to operate on units table without converting to pand…
4dc8e89 
…as dataframe #129
@rcpeene
Changed plot time inputs. Edited markdown
9e3f027
@rcpeene
Removed unit waveforms graphs, replaced with 2d image
25fde96
@rcpeene
regenerated some cells. removed extra cell
e4267d2
@rcpeene
Added correct time x axis for waveform plots
acb97ab
@rcpeene
Regenerated figures
aebdad3
@rcpeene
Merge pull request #128 from AllenInstitute/2p_responses
b61471a 
2p responses
@rcpeene
Merge pull request #133 from AllenInstitute/unit_responses
ad9bfe3 
Changed notebook to operate on units table without converting to pand…
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@rcpeene rcpeene merged commit b8ab23c into main Jan 19, 2023
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@rcpeene