Collection of R codes and horse perl scripts to perfrom analysis and data visualization in research article "Single-cell transcriptomics reveals the ameliorative effect of Rosmarinic acid on diabetic nephropathy-induced kidney injury by modulating oxidative stress and inflammation".
| Authors | Junhui Chen (chenjunhui) |
| chenjhbio@163.com | |
| License | GPLv3 |
If you used the codes or reference part of the code in your research, please kindly cited following paper: Chen et al. ABSP (2022) Single-cell transcriptomics reveals the ameliorative effect of Rosmarinic acid on diabetic nephropathy-induced kidney injury by modulating oxidative stress and inflammation
Following are a list of R packages that are used by the analysis pipeline. Before implement the codes, please comfirmed the packages have been installed on your R platform.
- Seaurat version 4.1.0
- DoubletFinder version 2.02
- clusterProfiler version 4.0.0
- SCP version: 0.5.6
- ggplot2 version: 3.3.5
The other R packages such as dplyr, should depend on R environment variable space to install the responding packages as following commands:
install.packages(dplyr)
or
BiocManager::install(dplyr)Just download the codes and implement in R platform under linux or window system. For packages installation, mainly intallated through conda or build-in funciont of R install.packages()