Collection of R codes or horse perl scripts to perfrom analysis and data visualization in research article "Exploring leaf variegation in Arabidopsis yellow variegated2 by single-cell RNA sequencing".
| Authors | Junhui Chen (chenjunhui) |
| License | GPLv3 |
If you used the codes or reference part of codes for your analysis, please kindly cited: Chai et al. (2025) Exploring leaf variegation in Arabidopsis yellow variegated2 by single-cell RNA sequencing
Following are a list of R packages that are used by the analysis pipeline. Before implement the codes, please comfirmed the packages have been installed on your R platform.
- Seaurat version 4.1.0
- clusterProfiler version 4.0.0
- monocle version: 2.20.0
- ggplot2 version: 3.3.5
The other R packages such as dplyr, should depend on R environment variable space to install the responding packages.
Just download the codes and implement in R platform under linux or window system. For packages installation, mainly intallated through conda or build-in funciont of R install.packages()