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BershteynLab / EMOD_Nyanza Public

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CalibrationData

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David J Kaftan edited this page Aug 17, 2023 · 1 revision

This model was calibrated to

The Number of People on ART
HIV Prevalence
Population

Wiki pages Pages 110

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[HIGH or MEDIUM risk] STI co infection at debut
[HIGH or MEDUIM risk] STI co infection for initial post debut population
[LOW risk] STI co infection at debut
[LOW risk] STI co infection for initial post debut population
ANC choose partners for testing
ANC PMTCT (Option A)
ANC PMTCT Choose Single Dose Nevirapine (sdNVP) or Combination (Option A B)
ANC PMTCT Combination Option A or B
ANC PMTCT Diagnostic Test (HIV rapid diagnostic)
ANC PMTCT Enter ART staging from PMTCT
ANC PMTCT Less Effective PMTCT (sdNVP)
ANC PMTCT Uptake of Diagnostic Testing at ANC
Apply traditional male circumcision intervention
ART Staging state 0 (HIV rapid diagnostic)
ARTStaging state 1 (random choice linking from positive diagnostic test)
ARTStaging state 2 (Muxer to make sure only one entry per DT)
ARTStaging state 3 (draw blood)
ARTStaging state 4 (check eligibility for ART, CD4 agnostic)
ARTStaging state 5 (random choice Return for CD4 or LTFU)
ARTStaging state 6 (check eligibility for ART by CD4)
Calibration
Calibration OnART
Calibration Parameters
Calibration Population
Calibration Prevalence
CalibrationData
Commercial Sex (Female) Delay to Dropout
Commercial Sex (Female) Delay to Uptake
Commercial Sex (Male) Delay to Dropout
Commercial Sex (Male) Delay to Uptake
Commercial Sex (Male) FSW client in Homa Bay at sexual debut, decide if will ever become an FSW client in his lifetime
Commercial Sex (Male) FSW client in Kisii at sexual debut, decide if will ever become an FSW client in his lifetime
Commercial Sex (Male) FSW client in Kisumu at sexual debut, decide if will ever become an FSW client in his lifetime
Commercial Sex (Male) FSW client in Migori at sexual debut, decide if will ever become an FSW client in his lifetime
Commercial Sex (Male) FSW client in Nyamira at sexual debut, decide if will ever become an FSW client in his lifetime
Commercial Sex (Male) FSW client in Siaya at sexual debut, decide if will ever become an FSW client in his lifetime
Commercial Sex Dropout
Commercial Sex Uptake
Consider immediate ART (after 2016) Female
Consider immediate ART (after 2016) Male
Consider increased testing uptake (after 2006)
Consider increased testing uptake (after 2009)
Consider not dropping (after 2016)
Consider not lost forever (after 2016)
DemographicData
Epidemic seeding
Flag new HIV positive patients' partners
FSW
HCTTestingLoop state 0 (delay to next HCT)
HCTTestingLoop state 1 (HIV rapid diagnostic)
HCTUptakeAtDebut state 0 (decision, sigmoid by year and sex)
HCTUptakePostDebut HCT Uptake Initialization
HCTUptakePostDebut state 0 (Post Debut)
HCTUptakePostDebut state 2 (Decision to uptake HCT)
HCTUptakePostDebut state 3 (From LTFU or ART dropout back into HCT uptake loop)
HCTUptakePostDebut1 state 1 (1 year delay, reachable)
Increase care accessibility
LinkingToART state 0 (Linking probability)
LinkingToPreART state 0 (Linking probability)
LostForever state 0
Male circumcision coverage from adjusted DMPPT2 model Kenya_HomaBay80_Nyanza MH 02Mar2017 dmpro Homa Bay ages 10 14
Male circumcision coverage from adjusted DMPPT2 model Kenya_HomaBay80_Nyanza MH 02Mar2017 dmpro Homa Bay ages 15 24
Male circumcision coverage from adjusted DMPPT2 model Kenya_HomaBay80_Nyanza MH 02Mar2017 dmpro Homa Bay ages 25 49
Male circumcision coverage from adjusted DMPPT2 model Kenya_Kisumu80_Nyanza MH 02Mar2017 dmpro Kisumu ages 10 14
Male circumcision coverage from adjusted DMPPT2 model Kenya_Kisumu80_Nyanza MH 02Mar2017 dmpro Kisumu ages 15 24
Male circumcision coverage from adjusted DMPPT2 model Kenya_Kisumu80_Nyanza MH 02Mar2017 dmpro Kisumu ages 25 49
Male circumcision coverage from adjusted DMPPT2 model Kenya_Migori80_Nyanza MH 02Mar2017 dmpro Migori ages 10 14
Male circumcision coverage from adjusted DMPPT2 model Kenya_Migori80_Nyanza MH 02Mar2017 dmpro Migori ages 15 24
Male circumcision coverage from adjusted DMPPT2 model Kenya_Migori80_Nyanza MH 02Mar2017 dmpro Migori ages 25 49
Male circumcision coverage from adjusted DMPPT2 model Kenya_Siaya80_Nyanza MH 02Mar2017 dmpro Siaya ages 10 14
Male circumcision coverage from adjusted DMPPT2 model Kenya_Siaya80_Nyanza MH 02Mar2017 dmpro Siaya ages 15 24
Male circumcision coverage from adjusted DMPPT2 model Kenya_Siaya80_Nyanza MH 02Mar2017 dmpro Siaya ages 25 49
Mark index partners
Mark partners of those in ANC
Mark those at the facility
Model Events (campaign.json)
OnART state 0 (muxer and delay)
OnART state 1 (run AntiretroviralTherapy)
OnART state 2 (delay to dropout)
OnART state 3 (run ARTDropout)
OnART state 4 (Willing to re enroll in ART)
Ongoing traditional male circumcision in Homa Bay
Ongoing traditional male circumcision in Kisii
Ongoing traditional male circumcision in Kisumu
Ongoing traditional male circumcision in Migori
Ongoing traditional male circumcision in Nyamira
Ongoing traditional male circumcision in Siaya
OnPreART state 0 (muxer, 182 day delay)
OnPreART state 1 (random choice pre ART or LTFU)
OnPreART state 2 (check eligibility for ART, CD4 agnostic)
OnPreART state 3 (draw blood)
OnPreART state 4 (check eligibility for ART by CD4)
PMTCT (Option B)
TestingOnChild6w state 0 (Presentation probability)
TestingOnSymptomatic state 0 (Presentation probability)
Trackers
Traditional male circumcision for initial population in Homa Bay
Traditional male circumcision for initial population in Kisii
Traditional male circumcision for initial population in Kisumu
Traditional male circumcision for initial population in Migori
Traditional male circumcision for initial population in Nyamira
Traditional male circumcision for initial population in Siaya
Update IP to track HIV or with known status
Will ever become female sex worker (FSW) in Homa Bay
Will ever become female sex worker (FSW) in Kisii
Will ever become female sex worker (FSW) in Kisumu
Will ever become female sex worker (FSW) in Migori
Will ever become female sex worker (FSW) in Nyamira
Will ever become female sex worker (FSW) in Siaya

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