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After struggling with build mace with bioconda or manually build with biocontainer, create mace dockerfile based on the centos7.
Just found simply type "conda install -c conda-forge -c bioconda mace==1.2" according to the information on https://biocontainers.pro/tools/mace
osallou
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osallou
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Should be in a subdir with upstream version name
mace/Dockerfile
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| ################## METADATA ###################### | ||
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| LABEL base_image="biocontainers:v1.0.0_cv4" | ||
| LABEL version="3" |
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First release of dockerfile so should be 1
you misunderstood me, must be in softwarename/softwareversion/Dockerfile in your case: mace/1.2/Dockerfile and software.name should be mace (lowercase) |
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Just a new guy in github. lol |
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about.license field is a URL. license should be the license identifier (GPL-3.0 for example). |
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about.license field is not in spdx list: https://spdx.org/licenses/, if it is a typo error, please fix it. If this is not a standard license, please specify Custom License and use about.license_file label to specify license location (in container or url). |
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Found a biotools entry matching the software name (https://bio.tools/MACE), if this is the same software, please add the extra.identifiers.biotools label to your Dockerfile |
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No test-cmds.txt (test file) present, skipping tests |
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as suggested, license field should be spdx compliant ie GPL-3.0-or-later or GPL-3.0-only (depends on soft license) and should see if biotools entry match this software to add related metadata label |
MACE on biotools is "MACE - Mass Spectra for Chemical Ecology". This software is "MACE - Model base Analysis of ChIP-Exo". |
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Found a biotools entry matching the software name (https://bio.tools/MACE), if this is the same software, please add the extra.identifiers.biotools label to your Dockerfile |
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No test-cmds.txt (test file) present, skipping tests |
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After struggling with build mace with bioconda or manually build with biocontainer, create mace dockerfile based on the centos7.
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Other message:
After convert quay.io/biocontainers/mace to singularity sif, couldn't bind directory with error:
/etc/resolv.conf doesn't exist in container
while run "conda install -c bioconda mace" showed error:
I've checked this version of docker could work in singularity with volume binding.