Hamming distance #15
Hamming distance #15
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Once the build has completed, you can preview your PR at this URL: https://biojulia.dev/BiojuliaDocs/previews/PR15/ |
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@kescobo Please let me know if the changes I implemented look good and if I can merge in! |
kescobo
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kescobo
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Also, this still needs semantic line breaks (sembr.org). You can ask an LLM to suggest if you're not sure, but it's not a hard-and fast rule, just shooting for shorter lines that are more-or-less complete clauses. It makes the diffs much nicer if future edits are made
docs/src/rosalind/06-hamm.md
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| ### For Loop | ||
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| Another way we can approach this would be to use the for-loop. This method will be a bit slower. |
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Not necessarily slower - actually this one might be a good candidate for a benchmarking run at the end.
Julia can often optimize for-loops like this, which is one of the things that makes it so powerful. You get SIMD from the count version, but you can also potentially make the for-loop parallel.
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Added benchmarking! The for-loop was a bit slower, but not suuuper slow! Cool!
Co-authored-by: Kevin Bonham <kevbonham@gmail.com>
Co-authored-by: Kevin Bonham <kevbonham@gmail.com>
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Semantic line breaks have been added, as well as some benchmarking. I did a last minute check for typos. Hopefully this tutorial will be ready for deployment after a final review! |
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I'm going to try pinning a different version of Documenter Vitepress due to an error with MathJax (related to the update that they made in v3.0. I'm happy to use a different solution, but thought this would be most straightforward for now. Deployment error here: https://github.com/BioJulia/BioTutorials/actions/runs/21789778782/job/62867068788 |
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The deployment seems to have worked on Github Actions. However, I'm now getting a 404 error on the site! |
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Tutorial for Hamming Distance problem
I added two different ways to solve the problem: with a function I wrote, as well as a function in the BioAlignments package. Please let me know if there's anything else that would be good to add to this tutorial!