fix: Apache-2.0 license text and stdout I/O for CSV/FASTA/PDB - #12
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Replace the short license notice with the official Apache License 2.0, preserve copyright attribution in NOTICE, and align packaging with PEP 639. Co-authored-by: Cursor <cursoragent@cursor.com>
Match to_json so biolm model run --format csv (and fasta/pdb) emit payload to stdout instead of creating a literal '-' file. Co-authored-by: Cursor <cursoragent@cursor.com>
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Summary
NOTICEcopyright file, and align packaging with SPDX / PEP 639 (license = "Apache-2.0").to_csv/to_fasta/to_pdbsofile_path="-"writes to stdout (matchingto_json), sobiolm model run ... --format csvactually prints instead of creating a literal-file.Test plan
LICENSE/NOTICEandLicense-Expression: Apache-2.0pytest tests/test_io.py(stdout-cases for csv/fasta/pdb)biolm model run esm2-8m encode -i <file>.json --format csvprints CSV to stdout (no-file in cwd)Made with Cursor