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742f057
Fix link
lshep Feb 28, 2023
120f39f
Merge branch 'Bioconductor:devel' into master
lshep Jun 20, 2023
d3c46cb
Fixes typo Fix #109
lshep Jun 20, 2023
9c08085
Merge branch 'master' of github.com:lshep/pkgrevdocs
lshep Jun 20, 2023
c9318e8
Merge branch 'Bioconductor:devel' into master
lshep Sep 12, 2023
a142fec
Update what to expect
lshep Sep 12, 2023
39d7f6c
Merge branch 'Bioconductor:devel' into master
lshep Feb 29, 2024
e5dde32
Merge branch 'Bioconductor:devel' into master
lshep Feb 29, 2024
261d877
strengthen wording for basilisk requirement instead of reticulate as …
lshep Feb 29, 2024
d9447ef
Merge branch 'Bioconductor:devel' into master
lshep Aug 12, 2024
6bc06af
Merge branch 'Bioconductor:devel' into master
lshep Nov 20, 2024
504b9b2
Update System Dependency section with @vjctin suggested text
lshep Nov 20, 2024
dcff8ac
Merge branch 'Bioconductor:devel' into master
lshep Dec 2, 2024
c27168b
Fixes #128
lshep Dec 2, 2024
04c55dc
Merge branch 'Bioconductor:devel' into master
lshep Apr 9, 2025
01739bd
Add note about submitter should be maintainer
lshep Apr 9, 2025
a807146
Merge branch 'Bioconductor:devel' into master
lshep Jun 9, 2025
d590852
Extend end of life description
lshep Jun 9, 2025
3523f0d
Merge branch 'Bioconductor:devel' into master
lshep Jun 9, 2025
d2c5187
Merge branch 'Bioconductor:devel' into master
lshep Nov 13, 2025
bf000da
Change package size to 10 MB
lshep Nov 13, 2025
e1ec8e6
Merge branch 'Bioconductor:devel' into master
lshep May 1, 2026
d0b8df1
Update checklist
lshep May 1, 2026
af45ecd
add no renv
lshep May 4, 2026
3de8225
Add checklist item for renv directory and lock file
lshep May 4, 2026
25b9e54
Merge branch 'Bioconductor:devel' into master
lshep May 28, 2026
87312ee
Merge branch 'master' of github.com:lshep/pkgrevdocs
lshep May 28, 2026
4b17665
Add ai / third party policy
lshep May 28, 2026
558cf7a
Merge branch 'Bioconductor:devel' into master
lshep May 28, 2026
3ecaeab
Add section on building and checking
lshep May 28, 2026
f6251c2
Merge branch 'master' of github.com:lshep/pkgrevdocs
lshep May 28, 2026
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1 change: 1 addition & 0 deletions _bookdown.yml
Original file line number Diff line number Diff line change
Expand Up @@ -26,6 +26,7 @@ rmd_files: ["index.Rmd",
"ai-policy-third-party.Rmd",
"non-software-packages.Rmd",
"gitignore-file.Rmd",
"build-check-bioccheck.Rmd",
"devguide-conclusion.Rmd",
"package-maintainence.Rmd",
"git-version-control.Rmd",
Expand Down
22 changes: 22 additions & 0 deletions build-check-bioccheck.Rmd
Original file line number Diff line number Diff line change
@@ -0,0 +1,22 @@
# Build / Check / BiocCheck

All new packages submitted are checked against the current Bioconductor devel
version. Bioconductor versions are closely associated with a specific R version. The
submitter should ensure the package is built and checked against the appropriate
version.


The package should `R CMD build`, `R CMD check`, and `BiocCheck` without ERROR.
See useful tools like [devools][] and [BiocCheck][] for more information.


As Bioconductor moves towards integration with
[R-universe][], it is also possible to set up a
GitHub Action to mimic the submission process environment. You will need to
ensure your [repository
settings](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/enabling-features-for-your-repository/managing-github-actions-settings-for-a-repository)
have GitHub actions enabled. The process for setting up the workflow to run
build, check and BiocCheck in github actions is documented on the R-Universe help page section for [Bioconductor and R-universe](https://docs.r-universe.dev/bioconductor/#debugging-the-ci)



4 changes: 4 additions & 0 deletions index.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -181,3 +181,7 @@ knitr::write_bib(c(
[testy]: https://github.com/ahoward/testy
[Valgrind]: http://valgrind.org/
[Xcode]: https://developer.apple.com/xcode/

[devools]: https://devtools.r-lib.org/reference/check.html
[BiocCheck]: https://www.bioconductor.org/packages/BiocCheck/
[R-Universe]: https://r-universe.dev/search
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