MSEtool v3.1.0

MSEtool 3.1.0

New additions

• Dynamic and equilibrium spawning potential ratio (SPR) are now calculated for the historical and projection years.
• add option to include empirical weight-at-age for the catches with cpars$Wt_age_C
• F_crash, F_med, and other reference points have been added to Hist@Ref$ByYear
• can now optimize for depletion in terms of SB/SBMSY with control$D <- 'SBMSY'
• option to simulate CAL data including removals (retained + discards) with OM@cpars$control$CAL="removals".
  Default is to simulate only retained catch-at-length.
• option to apply TAC to all removals with OM@cpars$control$TAC="removals".
  Default is to for TAC to refer to retained catch (i.e., removals will be greater than TAC if there are discards)

Minor changes

• add more informative messages when conditioning on real data
• add conditioning on real data for multiMSE
• MSY calculations now in C++ for significant speed increase

Fixes

• fix the plus-group calculations in popdynOneTScpp
• fix issue with simulated index in AddInd in the projection years