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MSEtool v3.3.0

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@AdrianHordyk AdrianHordyk released this 15 Nov 22:07

MSEtool 3.3.0

New additions

  • added Awatea2OM to import MCMC output from an Awatea assessment model to openMSE
  • reference points are now calculated assuming constant stock-recruit alpha and beta parameters. Previously, constant R0 and steepness was assumed. See (https://openmse.com/tutorial-reference-points/) for more details.

Fixes

  • fix minor bug in calculating SSB in first year when using OMs imported from SS3
  • fix minor bug when passing movement matrix in with cpars
  • fix minor bug so that the mean of sampled recruitment deviations in SS2MOM and SS2OM is one. The issue was noticeable when the autocorrelation is high.
  • add check for missing OM slots such as interval, pstar, nyears, etc

Minor changes

  • update plot_mov for plotting movement matrices.
  • ProjectMOM and multiMSE now drop the multiHist object from the MMSE object unless argument dropHist=FALSE