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@ilkilic ilkilic commented Jun 5, 2024

The rationale for this refactoring is to ensure that get_syn_descriptions returns the description only for the instantiated synapse

@ilkilic ilkilic marked this pull request as ready for review June 13, 2024 07:52
@ilkilic ilkilic requested a review from anilbey June 13, 2024 07:53
@ilkilic ilkilic self-assigned this Jun 13, 2024
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codecov-commenter commented Jun 14, 2024

Codecov Report

Attention: Patch coverage is 75.00000% with 2 lines in your changes missing coverage. Please review.

Project coverage is 91.24%. Comparing base (2e672f7) to head (fbbec9f).

Files Patch % Lines
bluecellulab/circuit_simulation.py 75.00% 2 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main     #187   +/-   ##
=======================================
  Coverage   91.24%   91.24%           
=======================================
  Files          95       95           
  Lines        5685     5687    +2     
=======================================
+ Hits         5187     5189    +2     
  Misses        498      498           

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Thanks @ilkilic for looking at it. I left some comments

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ilkilic commented Jul 9, 2024

I realized there was some confusion in my previous attempt. I have made some corrections that should now ensure consistency when get_syn_descriptions is called directly by a user

@ilkilic ilkilic requested a review from AurelienJaquier July 9, 2024 12:03
@ilkilic ilkilic changed the title Refactor 'projections' Correct 'projections' for get_syn_descriptions Jul 9, 2024
@ilkilic ilkilic merged commit 47d1931 into main Jul 9, 2024
@ilkilic ilkilic deleted the projection branch July 9, 2024 14:39
AurelienJaquier added a commit that referenced this pull request Aug 9, 2024
* add cvode argument to apply_multiple_stimuli (#191)

Co-authored-by: Jaquier Aurélien Tristan <aurelien.jaquier@epfl.ch>

* Feat: support custom node sets defined in simulation config (#192)

* Add holding current to apply_multiple_stimuli (#193)

Co-authored-by: Jaquier Aurélien Tristan <aurelien.jaquier@epfl.ch>

* Correct 'projections' for get_syn_descriptions (#187)

* add contributing guidelines (#190)

* replace amp_cv with relative_skew (#195)

* remove double CircuitSimulation (#196)

Co-authored-by: Jaquier Aurélien Tristan <aurelien.jaquier@epfl.ch>

* CI(dependabot): Bump anothrNick/github-tag-action from 1.69.0 to 1.70.0 (#198)

Bumps [anothrNick/github-tag-action](https://github.com/anothrnick/github-tag-action) from 1.69.0 to 1.70.0.
- [Release notes](https://github.com/anothrnick/github-tag-action/releases)
- [Commits](anothrNick/github-tag-action@1.69.0...1.70.0)

---
updated-dependencies:
- dependency-name: anothrNick/github-tag-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* add bb5-tests (#197)

* add bb5-tests

* remove gitlab-ci.yml

* remove duplicate mod files for bb5-tests and merge them into the 'tests' folder

* mod files info

* add license header

* update Makefile

* update readme

* Fix: Add missing 'units' attribute to timestamp in example test HDF5 file (#200)

* add gh action for paper draft

* add paper markdown

* update draft-pdf.yml

* fix yaml error in paper.md

* add explanation to draft-pdf.yml

* delete .gitlab-ci.yml for joss-paper

* reword draft-pdf rule

* trigger draft-pdf in any push

* add doi for the unix programming env

* add doi for agile software development Martin

* add doi for parnas1972criteria

* add explanation for figure1

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Aurélien Jaquier <72930209+AurelienJaquier@users.noreply.github.com>
Co-authored-by: Jaquier Aurélien Tristan <aurelien.jaquier@epfl.ch>
Co-authored-by: ilkilic <10600022+ilkilic@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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5 participants