v0.2.6

What's Changed

• Quell warnings with new versions of pandas by @mgeplf in #82
• Updating regression requirements by @mgeplf in #81
• Optimize volumetric dataset creation in linprog by @eleftherioszisis in #85

Full Changelog: v0.2.5...v0.2.6

v0.2.5

What's Changed

• Fix nans in compute_region_volumes by @mgeplf in #80

v0.2.4

What's Changed

• Updating copyright year 2024 by @bbpgithubaudit in #63
• Add r_square values to the results of the fitting. by @drodarie in #68
• Add check to the region filter in case the input dataset is all equal to 0 for the region of interest. by @drodarie in #74
• indent Test_mtype_densities_from_composition test right by @mgeplf in #76
• Cleanup by @mgeplf in #71
• Fix fitting and optimization steps by @drodarie in #75
• Faster _compute_region_cell_counts by @mgeplf in #72
• Cleanup app tests by @mgeplf in #78
• Faster compute average intensities by @mgeplf in #73
• Speedup mtype density creation from probability maps using voxcell's ValueToIndexVoxels by @eleftherioszisis in #79

Full Changelog: v0.2.3...v0.2.4

v0.2.3

What's Changed

• remove pkg_resources, use importlib by @mgeplf in #62
• Drop literature values from regions that are not in hierarchy or not in the annotation volume by @drodarie in #61

Full Changelog: v0.2.2...v0.2.3

v0.2.2

• add atlas-densities combination manipulate

v0.2.1

The following cell-density sub-commands can now optionally take a --group-ids-config-path:
cell-density, glia-cell-densities, inhibitory-and-excitatory-neuron-densities, fit-average-densities

Otherwise they use the default config for the AIBS atlas.

v0.2.0

Update atlas-density creation to be more universal

• Update the probability map to support regions
• Simplify the create-from-probability-map API
• Compute densities in parallel
• Support multiple probability maps
• Add output metadata

v0.1.5

Updates

• Update excitatory split section (#30)
• Show progress of the long measurements-to-average-densities process (#20)
• Do not modify input labels in density filenames (#32)

v0.1.4

• Density placement: Force scaling on voxels that are not full. Fix #27. (#28)
• split_into_halves existed in atlas_commons; remove the copy here (#26)
• Restrict ISH slice positions that are inside the volume_mask volume. (#25)

v0.1.3

• Add excitatory split