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Releases: BramDevlaminck/FastPeptideMatching

SA search testing

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@BramDevlaminck BramDevlaminck released this 22 May 10:10
db3fa55

What's Changed

Full Changelog: 1.0.2...1.0.3

Filter away empty functional annotation string in search result

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@BramDevlaminck BramDevlaminck released this 14 May 14:49
01bfc13
Merge pull request #24 from BramDevlaminck/empty_annotation_filter

filter away empty annotation string

Cargo dependency cleanup

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@BramDevlaminck BramDevlaminck released this 14 May 08:55
c75911b

This release does not introduce any features.
Only the dependencies of the suffix array are cleaned up.

Suffix array peptide matching

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@BramDevlaminck BramDevlaminck released this 14 May 07:58
f93d979

Fast, memory efficient peptide matching with suffix arrays

Ukkonen with NULL value represented by usize::MAX

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@BramDevlaminck BramDevlaminck released this 30 Oct 09:56
  • Added some tests
  • use a lib.rs file
  • Rewrite the use of <Option<usize>> to use a type alias of usize with a NULL value trait

Ukkonen with option type

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@BramDevlaminck BramDevlaminck released this 26 Oct 12:01
  • Working implementation of Ukkonen (or at least it should work)
  • All values that are possibly null are wrapped inside an Option => this has a lot of memory overhead (Option = 16 byte while usize is 8 byte big)