Changelog

v0.1.0-rc1 (in progress)

Initial release scaffolding.
Python proxy shim (paths, bootstrap, proxy, error shim).
Vendored CodeGraph engine from upstream v0.9.7.
Verified build-bundle.sh produces a working local-platform bundle.
End-to-end smoke test verified: shim spawns engine, tools list returns ~10
codegraph_* tools, symlink + DB materialize at expected paths.
UX revision: the engine binary (~45 MB) is no longer downloaded
silently on first start. Instead, the shim exposes a single
codegraphagent_check_engine tool that the agent must call first to
trigger the download. Subsequent calls return immediately. This replaces
a silent 30-60s stall during MCP initialize with a visible, deliberate
tool call.
Added codegraphagent_index_project MCP tool so agents can build the
CodeGraph index from within a BioRouter session (upstream's engine
expects codegraph init to be run from a terminal first). Proxy is now
JSON-RPC-frame-aware to intercept this tool while passing everything
else through.

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