Skip to content

v2.0.0

Choose a tag to compare

View all tags
@jessicarowell jessicarowell released this 04 Feb 22:41
v2.0.0
cfa47dd
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

What's Changed

  • Major update: mpxv-AssemblyGraph_gfaPy.py refactored to support Monkeypoxvirus clade I assemblies
  • Minor updates to containers:
  1. modules/local/summarize_tsv.nf: bionumpy:0.2.17--pyha8f3691_0
  2. modules/local/variant_convert.nf: bionumpy:0.2.17--pyha8f3691_0
  3. modules/local/summarize_qc.nf: pandas:1.1.5
  4. modules/local/publish_contigs.nf: bionumpy:0.2.17--pyha8f3691_0
  5. modules/local/aggregate_tsvs.nf: bionumpy:0.2.17--pyha8f3691_0
  6. modules/nf-core/modules/sratools/prefetch/main.nf: sra-tools:3.1.0--h9f5acd7_0
  7. modules/nf-core/modules/sratools/fasterqdump/main.nf: 2f4a4c900edd6801ff0068c2b3048b4459d119eb-0
  8. modules/nf-core/modules/unicycler/main.nf: unicycler:0.5.0--py312hc60241a_5
  • Minor updates to graph_reconstruct.nf to support mpxv-AssemblyGraph_gfaPy.py refactor
  • Commented out docker.userEmulation in nextflow.config

Full Changelog: v1.0.0...v1.1.0

Assets 2
Loading