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v4.2.0

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@jessicarowell jessicarowell released this 07 Feb 15:24
v4.2.0
b58653c
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What's Changed

  • Added --fetch_reports_only which looks on the NCBI server for report.xml files for the samples in the metadata file the user has indicated, for the databases the user has indicated.
  • Redefined --update_submission so it should be used for updating records on BioSample or SRA. It requires valid accession IDs in the submission_report.csv.
  • So TOSTADAS now has 3 different submission workflows: --submission runs an initial submission to BioSample, SRA, or Genbank. --fetch_reports_only will look for the report.xml files, and --update_submission should be used to update existing records with valid accession IDs.
  • Rework update submissions to allow re-submissions by @jessicarowell in #256

Full Changelog: v4.1.4...v4.2.0

Contributors

jessicarowell
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