fix(loki): send the logs to the arbutus loki instance

.github/workflows/ci.yml

@@ -19,66 +19,61 @@ jobs:
         python-version: ["3.8", "3.9", "3.10"]
     runs-on: ${{ matrix.os }}
     steps:
-    -
-      name: Checking out repository
-      uses: actions/checkout@v4
-    -
-      name: Setting up python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
-      with:
-        python-version: ${{ matrix.python-version }}
-    -
-      uses: pre-commit/action@v3.0.1
+      - name: Checking out repository
+        uses: actions/checkout@v4
+      - name: Setting up python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+      - uses: pre-commit/action@v3.0.1
 
   tests:
     strategy:
       matrix:
         os: [ubuntu-latest]
-        python-version: ["3.8", "3.9", "3.10"]
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
     runs-on: ${{ matrix.os }}
     needs: pre-commit
     steps:
-    -
-      name: Checking out repository
-      uses: actions/checkout@v4
-    -
-      name: Installing poetry
-      run: |
-        pipx install poetry
-    -
-      name: Setting up python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
-      with:
-        python-version: ${{ matrix.python-version }}
-        cache: 'poetry'
-    -
-      name: Login to Docker Hub
-      uses: docker/login-action@v3
-      with:
-        username: ${{ secrets.CHIMEFRB_DOCKER_USERNAME }}
-        password: ${{ secrets.CHIMEFRB_DOCKER_PASSWORD }}
-    -
-      name: Run services
-      run: |
-        docker compose -f docker-compose.yml up buckets mongo results -d
-        sleep 10
-        docker compose -f docker-compose.yml up -d
-        sleep 10
-        docker compose logs
-    -
-      name: Run workflow tests
-      run: |
-        poetry install --no-cache
-        poetry run workflow workspace set development
-        poetry run pytest --cov workflow/ --cov-report=lcov -s -v
-    -
-      name: Upload coverage report
-      uses: coverallsapp/github-action@master
-      with:
-        github-token: ${{ secrets.GITHUB_TOKEN }}
-        path-to-lcov: "coverage.lcov"
-    -
-      name: Kill services
-      if: always()
-      run: |
-        docker compose -f docker-compose.yml down -v
+      - name: Checking out repository
+        uses: actions/checkout@v4
+      - name: Load cached venv
+        uses: actions/cache@v5
+        with:
+          path: |
+            ~/.cache/pypoetry
+          key: poetry-${{ matrix.os }}-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }}
+      - name: Installation
+        run: |
+          pip install --upgrade pip
+          pip install poetry==2.1.2
+          poetry config virtualenvs.create true
+          poetry config virtualenvs.in-project false
+          poetry config cache-dir ~/.cache/pypoetry
+          poetry config virtualenvs.path ~/.cache/pypoetry/venv
+          poetry install
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.CHIMEFRB_DOCKER_USERNAME }}
+          password: ${{ secrets.CHIMEFRB_DOCKER_PASSWORD }}
+      - name: Run services
+        run: |
+          docker compose -f docker-compose.yml up buckets mongo results -d
+          sleep 10
+          docker compose -f docker-compose.yml up -d
+          sleep 10
+          docker compose logs
+      - name: Run workflow tests
+        run: |
+          poetry run workflow workspace set development
+          poetry run pytest --cov workflow/ --cov-report=lcov -s -v
+      - name: Upload coverage report
+        uses: coverallsapp/github-action@master
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          path-to-lcov: "coverage.lcov"
+      - name: Kill services
+        if: always()
+        run: |
+          docker compose -f docker-compose.yml down -v

Agents.md

@@ -14,8 +14,8 @@ interacting with the workflow system from the command line. Pipelines deposit `W
 objects into `buckets`; worker processes withdraw and execute them; results are
 archived to `results`.
 
-GitHub: https://github.com/CHIMEFRB/workflow  
-Docs: https://chimefrb.github.io/workflow-docs/  
+GitHub: https://github.com/CHIMEFRB/workflow
+Docs: https://chimefrb.github.io/workflow-docs/
 PyPI: `workflow.core`
 
 ## System Connections
@@ -144,7 +144,7 @@ Slack notification config. `WORKFLOW_NOTIFY_SLACK_*` env prefix.
 ```python
 # Deposit (create) work in the queue
 work = Work(pipeline="my-pipeline", site="chime", user="shinybrar")
-work.deposit(return_ids=True)   # → List[str] of MongoDB IDs
+work.deposit(return_ids=True)  # → List[str] of MongoDB IDs
 
 # Withdraw (claim) work for execution
 work = Work.withdraw(pipeline="my-pipeline", site="chime")