v0.7.0: Literature Intelligence (Europe PMC & PubMed)

BioContext v0.7.0: Literature Intelligence

What's New

• Europe PMC & PubMed Literature Adapter:
  • Full querying capabilities for biomedical publications via Europe PMC REST API.
  • Resolves queries by gene symbol, disease entity, PubMed ID (PMID), PubMed Central ID (PMCID), or Digital Object Identifier (DOI).
  • Rich citation metadata extraction including titles, authors, journals, publication years, full abstract text, citation count, and direct open-access URLs.
• FastMCP Literature Tools:
  • get_supporting_publications(query: str, limit: int = 5): Search biomedical literature for gene/disease evidence.
  • get_publication_details(identifier: str): Fetch granular paper metadata and abstract by PMID, PMCID, or DOI.
• CLI Literature Commands:
  • biocontext literature <query>: Interactive multi-paper literature search with formatted terminal tables.
  • biocontext paper <identifier>: Granular abstract and citation viewer directly in the terminal.
• Resilience & Testing:
  • Full test coverage for literature adapter queries and MCP tool interfaces (tests/test_literature_adapter.py).