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v0.9.0: Ontological Multi-hop Traversal & Reasoning Engine

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@engkinandatama engkinandatama released this 10 Oct 11:28
· 3 commits to main since this release
v0.9.0
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What's Changed in v0.9.0

Ontological Multi-Hop Traversal Engine (PRD-22)

  • Implemented deterministic graph traversal (TraversalEngine) linking biological queries across genes, proteins, pathways, and diseases.
  • Explores connected paths up to configurable max_hops with cumulative edge scoring.
  • Added natural language template explanation generating mechanistic rationale for every discovered path.
  • Exposed new MCP tool traverse_biological_graph and CLI command biocontext traverse.
  • Integrated full end-to-end traversal test cases in tests/test_graph.py.

Full Changelog: v0.8.0...v0.9.0

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