CellProfiler · ErinWeisbart · May 25, 2023 · May 8, 2023 · May 9, 2023 · May 9, 2023
diff --git a/cellprofiler_plugins/__init__.py b/cellprofiler_plugins/__init__.py
diff --git a/cellprofiler_plugins/setting.py b/cellprofiler_plugins/setting.py
diff --git a/tests/resources/callbarcodes_Barcodes.csv b/tests/resources/callbarcodes_Barcodes.csv
@@ -0,0 +1,6 @@
+gene_symbol,sgRNA
+ABCF1,GCAACACATCAATGTTGGGA
+ADAR,TTCTTGTAGGGTGAACACCG
+SLC25A6,CGAAGTTGAGGGCTTGAGTG
+ANXA2,GGTCCTTCTCTGGTAGGCGA
+nontargeting,CGCAATCCCTTAGGATAGCC
diff --git a/...es/modules/runimagejscript/dummyscript.py → .../resources/runimagejscript_dummyscript.py b/...es/modules/runimagejscript/dummyscript.py → .../resources/runimagejscript_dummyscript.py
diff --git a/tests/modules/test_runimagejscript.py → tests/test_runimagejscript.py b/tests/modules/test_runimagejscript.py → tests/test_runimagejscript.py
diff --git a/CellProfiler2/calculatehistogram.py → ...ugins/CellProfiler2/calculatehistogram.py b/CellProfiler2/calculatehistogram.py → ...ugins/CellProfiler2/calculatehistogram.py
diff --git a/CellProfiler2/calculatemoments.py → ...plugins/CellProfiler2/calculatemoments.py b/CellProfiler2/calculatemoments.py → ...plugins/CellProfiler2/calculatemoments.py
diff --git a/CellProfiler2/enhancedmeasuretexture.py → ...s/CellProfiler2/enhancedmeasuretexture.py b/CellProfiler2/enhancedmeasuretexture.py → ...s/CellProfiler2/enhancedmeasuretexture.py
diff --git a/CellProfiler2/identifylinearobjects.py → ...ns/CellProfiler2/identifylinearobjects.py b/CellProfiler2/identifylinearobjects.py → ...ns/CellProfiler2/identifylinearobjects.py
diff --git a/CellProfiler2/transform.py → ...tained_plugins/CellProfiler2/transform.py b/CellProfiler2/transform.py → ...tained_plugins/CellProfiler2/transform.py
diff --git a/CellProfiler3/DoGNet.py → unmaintained_plugins/CellProfiler3/DoGNet.py b/CellProfiler3/DoGNet.py → unmaintained_plugins/CellProfiler3/DoGNet.py
diff --git a/...ghts/Simple_Anisotropic_4_11_2_prism17.t7 → ...ghts/Simple_Anisotropic_4_11_2_prism17.t7 b/...ghts/Simple_Anisotropic_4_11_2_prism17.t7 → ...ghts/Simple_Anisotropic_4_11_2_prism17.t7
diff --git a/CellProfiler3/activecontourmodel.py → ...ugins/CellProfiler3/activecontourmodel.py b/CellProfiler3/activecontourmodel.py → ...ugins/CellProfiler3/activecontourmodel.py
diff --git a/CellProfiler3/blobdetection.py → ...ed_plugins/CellProfiler3/blobdetection.py b/CellProfiler3/blobdetection.py → ...ed_plugins/CellProfiler3/blobdetection.py
diff --git a/CellProfiler3/calculatehistogram.py → ...ugins/CellProfiler3/calculatehistogram.py b/CellProfiler3/calculatehistogram.py → ...ugins/CellProfiler3/calculatehistogram.py
diff --git a/CellProfiler3/calculatemoments.py → ...plugins/CellProfiler3/calculatemoments.py b/CellProfiler3/calculatemoments.py → ...plugins/CellProfiler3/calculatemoments.py
diff --git a/CellProfiler3/callbarcodes.py → ...ned_plugins/CellProfiler3/callbarcodes.py b/CellProfiler3/callbarcodes.py → ...ned_plugins/CellProfiler3/callbarcodes.py
diff --git a/cellstar/__init__.py → ...lugins/CellProfiler3/cellstar/__init__.py b/cellstar/__init__.py → ...lugins/CellProfiler3/cellstar/__init__.py
diff --git a/cellstar/core/__init__.py → ...s/CellProfiler3/cellstar/core/__init__.py b/cellstar/core/__init__.py → ...s/CellProfiler3/cellstar/core/__init__.py
diff --git a/cellstar/core/config.py → ...ins/CellProfiler3/cellstar/core/config.py b/cellstar/core/config.py → ...ins/CellProfiler3/cellstar/core/config.py
diff --git a/cellstar/core/image_repo.py → ...CellProfiler3/cellstar/core/image_repo.py b/cellstar/core/image_repo.py → ...CellProfiler3/cellstar/core/image_repo.py
diff --git a/cellstar/core/parallel/__init__.py → ...filer3/cellstar/core/parallel/__init__.py b/cellstar/core/parallel/__init__.py → ...filer3/cellstar/core/parallel/__init__.py
diff --git a/cellstar/core/parallel/snake_grow.py → ...ler3/cellstar/core/parallel/snake_grow.py b/cellstar/core/parallel/snake_grow.py → ...ler3/cellstar/core/parallel/snake_grow.py
diff --git a/cellstar/core/point.py → ...gins/CellProfiler3/cellstar/core/point.py b/cellstar/core/point.py → ...gins/CellProfiler3/cellstar/core/point.py
diff --git a/cellstar/core/polar_transform.py → ...rofiler3/cellstar/core/polar_transform.py b/cellstar/core/polar_transform.py → ...rofiler3/cellstar/core/polar_transform.py
diff --git a/cellstar/core/seed.py → ...ugins/CellProfiler3/cellstar/core/seed.py b/cellstar/core/seed.py → ...ugins/CellProfiler3/cellstar/core/seed.py
diff --git a/cellstar/core/seeder.py → ...ins/CellProfiler3/cellstar/core/seeder.py b/cellstar/core/seeder.py → ...ins/CellProfiler3/cellstar/core/seeder.py
diff --git a/cellstar/core/snake.py → ...gins/CellProfiler3/cellstar/core/snake.py b/cellstar/core/snake.py → ...gins/CellProfiler3/cellstar/core/snake.py
diff --git a/cellstar/core/snake_filter.py → ...llProfiler3/cellstar/core/snake_filter.py b/cellstar/core/snake_filter.py → ...llProfiler3/cellstar/core/snake_filter.py
diff --git a/cellstar/parameter_fitting/__init__.py → ...r3/cellstar/parameter_fitting/__init__.py b/cellstar/parameter_fitting/__init__.py → ...r3/cellstar/parameter_fitting/__init__.py
diff --git a/cellstar/parameter_fitting/pf_auto_params.py → ...lstar/parameter_fitting/pf_auto_params.py b/cellstar/parameter_fitting/pf_auto_params.py → ...lstar/parameter_fitting/pf_auto_params.py
diff --git a/cellstar/parameter_fitting/pf_mutator.py → .../cellstar/parameter_fitting/pf_mutator.py b/cellstar/parameter_fitting/pf_mutator.py → .../cellstar/parameter_fitting/pf_mutator.py
diff --git a/cellstar/parameter_fitting/pf_process.py → .../cellstar/parameter_fitting/pf_process.py b/cellstar/parameter_fitting/pf_process.py → .../cellstar/parameter_fitting/pf_process.py
diff --git a/...star/parameter_fitting/pf_rank_process.py → ...star/parameter_fitting/pf_rank_process.py b/...star/parameter_fitting/pf_rank_process.py → ...star/parameter_fitting/pf_rank_process.py
diff --git a/cellstar/parameter_fitting/pf_rank_snake.py → ...llstar/parameter_fitting/pf_rank_snake.py b/cellstar/parameter_fitting/pf_rank_snake.py → ...llstar/parameter_fitting/pf_rank_snake.py
diff --git a/cellstar/parameter_fitting/pf_runner.py → ...3/cellstar/parameter_fitting/pf_runner.py b/cellstar/parameter_fitting/pf_runner.py → ...3/cellstar/parameter_fitting/pf_runner.py
diff --git a/cellstar/parameter_fitting/pf_snake.py → ...r3/cellstar/parameter_fitting/pf_snake.py b/cellstar/parameter_fitting/pf_snake.py → ...r3/cellstar/parameter_fitting/pf_snake.py
diff --git a/cellstar/segmentation.py → ...ns/CellProfiler3/cellstar/segmentation.py b/cellstar/segmentation.py → ...ns/CellProfiler3/cellstar/segmentation.py
diff --git a/cellstar/utils/__init__.py → .../CellProfiler3/cellstar/utils/__init__.py b/cellstar/utils/__init__.py → .../CellProfiler3/cellstar/utils/__init__.py
diff --git a/cellstar/utils/calc_util.py → ...CellProfiler3/cellstar/utils/calc_util.py b/cellstar/utils/calc_util.py → ...CellProfiler3/cellstar/utils/calc_util.py
diff --git a/cellstar/utils/debug_util.py → ...ellProfiler3/cellstar/utils/debug_util.py b/cellstar/utils/debug_util.py → ...ellProfiler3/cellstar/utils/debug_util.py
diff --git a/cellstar/utils/image_util.py → ...ellProfiler3/cellstar/utils/image_util.py b/cellstar/utils/image_util.py → ...ellProfiler3/cellstar/utils/image_util.py
diff --git a/cellstar/utils/index.py → ...ins/CellProfiler3/cellstar/utils/index.py b/cellstar/utils/index.py → ...ins/CellProfiler3/cellstar/utils/index.py
diff --git a/cellstar/utils/params_util.py → ...llProfiler3/cellstar/utils/params_util.py b/cellstar/utils/params_util.py → ...llProfiler3/cellstar/utils/params_util.py
diff --git a/CellProfiler3/classifypixelsunet.py → ...ugins/CellProfiler3/classifypixelsunet.py b/CellProfiler3/classifypixelsunet.py → ...ugins/CellProfiler3/classifypixelsunet.py
diff --git a/CellProfiler3/compensatecolors.py → ...plugins/CellProfiler3/compensatecolors.py b/CellProfiler3/compensatecolors.py → ...plugins/CellProfiler3/compensatecolors.py
diff --git a/CellProfiler3/constrainobjects.py → ...plugins/CellProfiler3/constrainobjects.py b/CellProfiler3/constrainobjects.py → ...plugins/CellProfiler3/constrainobjects.py
diff --git a/CellProfiler3/convertoutlinestoobjects.py → ...CellProfiler3/convertoutlinestoobjects.py b/CellProfiler3/convertoutlinestoobjects.py → ...CellProfiler3/convertoutlinestoobjects.py
diff --git a/CellProfiler3/declump.py → ...intained_plugins/CellProfiler3/declump.py b/CellProfiler3/declump.py → ...intained_plugins/CellProfiler3/declump.py
diff --git a/CellProfiler3/edgedetection.py → ...ed_plugins/CellProfiler3/edgedetection.py b/CellProfiler3/edgedetection.py → ...ed_plugins/CellProfiler3/edgedetection.py
diff --git a/CellProfiler3/enhancedmeasuretexture.py → ...s/CellProfiler3/enhancedmeasuretexture.py b/CellProfiler3/enhancedmeasuretexture.py → ...s/CellProfiler3/enhancedmeasuretexture.py
diff --git a/CellProfiler3/exporttocellh5.py → ...d_plugins/CellProfiler3/exporttocellh5.py b/CellProfiler3/exporttocellh5.py → ...d_plugins/CellProfiler3/exporttocellh5.py
diff --git a/CellProfiler3/gammacorrection.py → ..._plugins/CellProfiler3/gammacorrection.py b/CellProfiler3/gammacorrection.py → ..._plugins/CellProfiler3/gammacorrection.py
diff --git a/CellProfiler3/histogramequalization.py → ...ns/CellProfiler3/histogramequalization.py b/CellProfiler3/histogramequalization.py → ...ns/CellProfiler3/histogramequalization.py
diff --git a/CellProfiler3/identifylinearobjects.py → ...ns/CellProfiler3/identifylinearobjects.py b/CellProfiler3/identifylinearobjects.py → ...ns/CellProfiler3/identifylinearobjects.py
diff --git a/CellProfiler3/identifyyeastcells.py → ...ugins/CellProfiler3/identifyyeastcells.py b/CellProfiler3/identifyyeastcells.py → ...ugins/CellProfiler3/identifyyeastcells.py
diff --git a/CellProfiler3/imagegradient.py → ...ed_plugins/CellProfiler3/imagegradient.py b/CellProfiler3/imagegradient.py → ...ed_plugins/CellProfiler3/imagegradient.py
diff --git a/CellProfiler3/laplacianofgaussian.py → ...gins/CellProfiler3/laplacianofgaussian.py b/CellProfiler3/laplacianofgaussian.py → ...gins/CellProfiler3/laplacianofgaussian.py
diff --git a/CellProfiler3/measure_population_context.py → ...llProfiler3/measure_population_context.py b/CellProfiler3/measure_population_context.py → ...llProfiler3/measure_population_context.py
diff --git a/CellProfiler3/measureimagefocus.py → ...lugins/CellProfiler3/measureimagefocus.py b/CellProfiler3/measureimagefocus.py → ...lugins/CellProfiler3/measureimagefocus.py
diff --git a/CellProfiler3/measureradialentropy.py → ...ins/CellProfiler3/measureradialentropy.py b/CellProfiler3/measureradialentropy.py → ...ins/CellProfiler3/measureradialentropy.py
diff --git a/CellProfiler3/measuretrackquality.py → ...gins/CellProfiler3/measuretrackquality.py b/CellProfiler3/measuretrackquality.py → ...gins/CellProfiler3/measuretrackquality.py
diff --git a/CellProfiler3/mergeobjects.py → ...ned_plugins/CellProfiler3/mergeobjects.py b/CellProfiler3/mergeobjects.py → ...ned_plugins/CellProfiler3/mergeobjects.py
diff --git a/CellProfiler3/nucleaizer.py → ...ained_plugins/CellProfiler3/nucleaizer.py b/CellProfiler3/nucleaizer.py → ...ained_plugins/CellProfiler3/nucleaizer.py
diff --git a/CellProfiler3/predict.py → ...intained_plugins/CellProfiler3/predict.py b/CellProfiler3/predict.py → ...intained_plugins/CellProfiler3/predict.py
diff --git a/CellProfiler3/randomwalkeralgorithm.py → ...ns/CellProfiler3/randomwalkeralgorithm.py b/CellProfiler3/randomwalkeralgorithm.py → ...ns/CellProfiler3/randomwalkeralgorithm.py
diff --git a/CellProfiler3/rescale_mean_sd.py → ..._plugins/CellProfiler3/rescale_mean_sd.py b/CellProfiler3/rescale_mean_sd.py → ..._plugins/CellProfiler3/rescale_mean_sd.py
diff --git a/CellProfiler3/rescale_mode_percentile.py → .../CellProfiler3/rescale_mode_percentile.py b/CellProfiler3/rescale_mode_percentile.py → .../CellProfiler3/rescale_mode_percentile.py
diff --git a/CellProfiler3/runimagej.py → ...tained_plugins/CellProfiler3/runimagej.py b/CellProfiler3/runimagej.py → ...tained_plugins/CellProfiler3/runimagej.py
diff --git a/CellProfiler3/save_16bit_pngs.py → ..._plugins/CellProfiler3/save_16bit_pngs.py b/CellProfiler3/save_16bit_pngs.py → ..._plugins/CellProfiler3/save_16bit_pngs.py
diff --git a/CellProfiler3/seedobjects.py → ...ined_plugins/CellProfiler3/seedobjects.py b/CellProfiler3/seedobjects.py → ...ined_plugins/CellProfiler3/seedobjects.py
diff --git a/CellProfiler3/shollanalysis.py → ...ed_plugins/CellProfiler3/shollanalysis.py b/CellProfiler3/shollanalysis.py → ...ed_plugins/CellProfiler3/shollanalysis.py
diff --git a/CellProfiler3/spectralanalysis.py → ...plugins/CellProfiler3/spectralanalysis.py b/CellProfiler3/spectralanalysis.py → ...plugins/CellProfiler3/spectralanalysis.py
diff --git a/CellProfiler3/tests/conftest.py → ...d_plugins/CellProfiler3/tests/conftest.py b/CellProfiler3/tests/conftest.py → ...d_plugins/CellProfiler3/tests/conftest.py
diff --git a/CellProfiler3/thresh_all.py → ...ained_plugins/CellProfiler3/thresh_all.py b/CellProfiler3/thresh_all.py → ...ained_plugins/CellProfiler3/thresh_all.py
diff --git a/CellProfiler3/tophattransform.py → ..._plugins/CellProfiler3/tophattransform.py b/CellProfiler3/tophattransform.py → ..._plugins/CellProfiler3/tophattransform.py
diff --git a/CellProfiler3/transform.py → ...tained_plugins/CellProfiler3/transform.py b/CellProfiler3/transform.py → ...tained_plugins/CellProfiler3/transform.py
diff --git a/CellProfiler3/transformfilters.py → ...plugins/CellProfiler3/transformfilters.py b/CellProfiler3/transformfilters.py → ...plugins/CellProfiler3/transformfilters.py
diff --git a/CellProfiler4_AutoConvert/DoGNet.py → ...ins/CellProfiler4_autoconverted/DoGNet.py b/CellProfiler4_AutoConvert/DoGNet.py → ...ins/CellProfiler4_autoconverted/DoGNet.py
diff --git a/unmaintained_plugins/CellProfiler4_autoconverted/README.md b/unmaintained_plugins/CellProfiler4_autoconverted/README.md
@@ -0,0 +1,2 @@
+Plugins in the CellProfiler4_autoconverted folder were automatically converted from Python2 to Python3 in preparation for compatability with CellProfiler4, but 
+they have not been tested for functionality.
diff --git a/...ofiler4_AutoConvert/activecontourmodel.py → ...iler4_autoconverted/activecontourmodel.py b/...ofiler4_AutoConvert/activecontourmodel.py → ...iler4_autoconverted/activecontourmodel.py
diff --git a/CellProfiler4_AutoConvert/blobdetection.py → ...lProfiler4_autoconverted/blobdetection.py b/CellProfiler4_AutoConvert/blobdetection.py → ...lProfiler4_autoconverted/blobdetection.py
diff --git a/...ofiler4_AutoConvert/calculatehistogram.py → ...iler4_autoconverted/calculatehistogram.py b/...ofiler4_AutoConvert/calculatehistogram.py → ...iler4_autoconverted/calculatehistogram.py
diff --git a/...Profiler4_AutoConvert/calculatemoments.py → ...ofiler4_autoconverted/calculatemoments.py b/...Profiler4_AutoConvert/calculatemoments.py → ...ofiler4_autoconverted/calculatemoments.py
diff --git a/...ofiler4_AutoConvert/classifypixelsunet.py → ...iler4_autoconverted/classifypixelsunet.py b/...ofiler4_AutoConvert/classifypixelsunet.py → ...iler4_autoconverted/classifypixelsunet.py
diff --git a/...Profiler4_AutoConvert/constrainobjects.py → ...ofiler4_autoconverted/constrainobjects.py b/...Profiler4_AutoConvert/constrainobjects.py → ...ofiler4_autoconverted/constrainobjects.py
diff --git a/...4_AutoConvert/convertoutlinestoobjects.py → ...autoconverted/convertoutlinestoobjects.py b/...4_AutoConvert/convertoutlinestoobjects.py → ...autoconverted/convertoutlinestoobjects.py
diff --git a/CellProfiler4_AutoConvert/edgedetection.py → ...lProfiler4_autoconverted/edgedetection.py b/CellProfiler4_AutoConvert/edgedetection.py → ...lProfiler4_autoconverted/edgedetection.py
diff --git a/CellProfiler4_AutoConvert/exporttocellh5.py → ...Profiler4_autoconverted/exporttocellh5.py b/CellProfiler4_AutoConvert/exporttocellh5.py → ...Profiler4_autoconverted/exporttocellh5.py
diff --git a/CellProfiler4_AutoConvert/gammacorrection.py → ...rofiler4_autoconverted/gammacorrection.py b/CellProfiler4_AutoConvert/gammacorrection.py → ...rofiler4_autoconverted/gammacorrection.py
diff --git a/...ler4_AutoConvert/histogramequalization.py → ...r4_autoconverted/histogramequalization.py b/...ler4_AutoConvert/histogramequalization.py → ...r4_autoconverted/histogramequalization.py
diff --git a/...ler4_AutoConvert/identifylinearobjects.py → ...r4_autoconverted/identifylinearobjects.py b/...ler4_AutoConvert/identifylinearobjects.py → ...r4_autoconverted/identifylinearobjects.py
diff --git a/...ofiler4_AutoConvert/identifyyeastcells.py → ...iler4_autoconverted/identifyyeastcells.py b/...ofiler4_AutoConvert/identifyyeastcells.py → ...iler4_autoconverted/identifyyeastcells.py
diff --git a/CellProfiler4_AutoConvert/imagegradient.py → ...lProfiler4_autoconverted/imagegradient.py b/CellProfiler4_AutoConvert/imagegradient.py → ...lProfiler4_autoconverted/imagegradient.py
diff --git a/...filer4_AutoConvert/laplacianofgaussian.py → ...ler4_autoconverted/laplacianofgaussian.py b/...filer4_AutoConvert/laplacianofgaussian.py → ...ler4_autoconverted/laplacianofgaussian.py
diff --git a/...rofiler4_AutoConvert/measureimagefocus.py → ...filer4_autoconverted/measureimagefocus.py b/...rofiler4_AutoConvert/measureimagefocus.py → ...filer4_autoconverted/measureimagefocus.py
diff --git a/...4_AutoConvert/measurepopulationcontext.py → ...autoconverted/measurepopulationcontext.py b/...4_AutoConvert/measurepopulationcontext.py → ...autoconverted/measurepopulationcontext.py
diff --git a/...iler4_AutoConvert/measureradialentropy.py → ...er4_autoconverted/measureradialentropy.py b/...iler4_AutoConvert/measureradialentropy.py → ...er4_autoconverted/measureradialentropy.py
diff --git a/...filer4_AutoConvert/measuretrackquality.py → ...ler4_autoconverted/measuretrackquality.py b/...filer4_AutoConvert/measuretrackquality.py → ...ler4_autoconverted/measuretrackquality.py
diff --git a/CellProfiler4_AutoConvert/mergeobjects.py → ...llProfiler4_autoconverted/mergeobjects.py b/CellProfiler4_AutoConvert/mergeobjects.py → ...llProfiler4_autoconverted/mergeobjects.py
diff --git a/CellProfiler4_AutoConvert/nucleaizer.py → ...CellProfiler4_autoconverted/nucleaizer.py b/CellProfiler4_AutoConvert/nucleaizer.py → ...CellProfiler4_autoconverted/nucleaizer.py
diff --git a/CellProfiler4_AutoConvert/predict.py → ...ns/CellProfiler4_autoconverted/predict.py b/CellProfiler4_AutoConvert/predict.py → ...ns/CellProfiler4_autoconverted/predict.py
diff --git a/...ler4_AutoConvert/randomwalkeralgorithm.py → ...r4_autoconverted/randomwalkeralgorithm.py b/...ler4_AutoConvert/randomwalkeralgorithm.py → ...r4_autoconverted/randomwalkeralgorithm.py
diff --git a/CellProfiler4_AutoConvert/rescalemeansd.py → ...lProfiler4_autoconverted/rescalemeansd.py b/CellProfiler4_AutoConvert/rescalemeansd.py → ...lProfiler4_autoconverted/rescalemeansd.py
diff --git a/...ler4_AutoConvert/rescalemodepercentile.py → ...r4_autoconverted/rescalemodepercentile.py b/...ler4_AutoConvert/rescalemodepercentile.py → ...r4_autoconverted/rescalemodepercentile.py
diff --git a/CellProfiler4_AutoConvert/runimagej.py → .../CellProfiler4_autoconverted/runimagej.py b/CellProfiler4_AutoConvert/runimagej.py → .../CellProfiler4_autoconverted/runimagej.py
diff --git a/CellProfiler4_AutoConvert/save16bitpngs.py → ...lProfiler4_autoconverted/save16bitpngs.py b/CellProfiler4_AutoConvert/save16bitpngs.py → ...lProfiler4_autoconverted/save16bitpngs.py
diff --git a/CellProfiler4_AutoConvert/seedobjects.py → ...ellProfiler4_autoconverted/seedobjects.py b/CellProfiler4_AutoConvert/seedobjects.py → ...ellProfiler4_autoconverted/seedobjects.py
diff --git a/CellProfiler4_AutoConvert/shollanalysis.py → ...lProfiler4_autoconverted/shollanalysis.py b/CellProfiler4_AutoConvert/shollanalysis.py → ...lProfiler4_autoconverted/shollanalysis.py
diff --git a/...Profiler4_AutoConvert/spectralanalysis.py → ...ofiler4_autoconverted/spectralanalysis.py b/...Profiler4_AutoConvert/spectralanalysis.py → ...ofiler4_autoconverted/spectralanalysis.py
diff --git a/...rofiler4_AutoConvert/testallthresholds.py → ...filer4_autoconverted/testallthresholds.py b/...rofiler4_AutoConvert/testallthresholds.py → ...filer4_autoconverted/testallthresholds.py
diff --git a/CellProfiler4_AutoConvert/tophattransform.py → ...rofiler4_autoconverted/tophattransform.py b/CellProfiler4_AutoConvert/tophattransform.py → ...rofiler4_autoconverted/tophattransform.py
diff --git a/...Profiler4_AutoConvert/transformfilters.py → ...ofiler4_autoconverted/transformfilters.py b/...Profiler4_AutoConvert/transformfilters.py → ...ofiler4_autoconverted/transformfilters.py
diff --git a/CellProfiler4_AutoConvert/transforms.py → ...CellProfiler4_autoconverted/transforms.py b/CellProfiler4_AutoConvert/transforms.py → ...CellProfiler4_autoconverted/transforms.py
diff --git a/tests/test_blobdetection.py → unmaintained_tests/test_blobdetection.py b/tests/test_blobdetection.py → unmaintained_tests/test_blobdetection.py
diff --git a/tests/test_constrainobjects.py → unmaintained_tests/test_constrainobjects.py b/tests/test_constrainobjects.py → unmaintained_tests/test_constrainobjects.py
diff --git a/tests/test_edgedetection.py → unmaintained_tests/test_edgedetection.py b/tests/test_edgedetection.py → unmaintained_tests/test_edgedetection.py
diff --git a/tests/test_gammacorrection.py → unmaintained_tests/test_gammacorrection.py b/tests/test_gammacorrection.py → unmaintained_tests/test_gammacorrection.py
diff --git a/tests/test_identifyyeastcells.py → ...intained_tests/test_identifyyeastcells.py b/tests/test_identifyyeastcells.py → ...intained_tests/test_identifyyeastcells.py
diff --git a/tests/test_imagegradient.py → unmaintained_tests/test_imagegradient.py b/tests/test_imagegradient.py → unmaintained_tests/test_imagegradient.py
diff --git a/tests/test_laplacianofgaussian.py → ...ntained_tests/test_laplacianofgaussian.py b/tests/test_laplacianofgaussian.py → ...ntained_tests/test_laplacianofgaussian.py
diff --git a/tests/test_measuretrackquality.py → ...ntained_tests/test_measuretrackquality.py b/tests/test_measuretrackquality.py → ...ntained_tests/test_measuretrackquality.py
diff --git a/tests/test_mergeobjects.py → unmaintained_tests/test_mergeobjects.py b/tests/test_mergeobjects.py → unmaintained_tests/test_mergeobjects.py
diff --git a/tests/test_randomwalkeralgorithm.py → ...ained_tests/test_randomwalkeralgorithm.py b/tests/test_randomwalkeralgorithm.py → ...ained_tests/test_randomwalkeralgorithm.py
diff --git a/tests/test_seedobjects.py → unmaintained_tests/test_seedobjects.py b/tests/test_seedobjects.py → unmaintained_tests/test_seedobjects.py
diff --git a/tests/test_shollanalysis.py → unmaintained_tests/test_shollanalysis.py b/tests/test_shollanalysis.py → unmaintained_tests/test_shollanalysis.py
diff --git a/tests/test_tophattransform.py → unmaintained_tests/test_tophattransform.py b/tests/test_tophattransform.py → unmaintained_tests/test_tophattransform.py
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		@@ -0,0 +1,2 @@
		Plugins in the CellProfiler4_autoconverted folder were automatically converted from Python2 to Python3 in preparation for compatability with CellProfiler4, but
		they have not been tested for functionality.