v1.1.2

Fixed bug in HGVS annotations for out-of-frame duplications > 1 nt.

v1.1.1

Fixed bugs in HGVS annotations for single in-frame insertions and MNPs spanning the CDS-3' UTR junction. Ensure deletion-insertion annotations follow HGVS proposal SVD-WG010.

v1.1.0

Added support for simple insertion and deletion calling. Added MAVE-HGVS annotations.

v1.0.4

Fixed bug where relative file paths for the output directory caused the alignment workflow to fail.

v1.0.3

Fixed bug where relative file paths for the FASTQs caused the alignment workflow to fail. Removed the filtering of GFF records that annotate contigs with RefSeq accession identifiers (NT or NW), as filtering may lead to errors with custom reference files specifying a contig that begins with NT or NW.

v1.0.2

Fixed variant calling bug that caused di-nt MNPs to be called as two SNPs when the di-nt MNP was downstream of a single SNP or another di-nt MNP.

v1.0.1

Fixed bug that caused satmut_utils 'call' to fail when running consensus deduplication with --nthreads 0

v1.0.0+001

Added minimum versions for software dependencies. Update install script to pull satmut_utils package from PyPi during creation of Conda environment�.

v1.0.0

First release of satmut_utils