SPsimSeq version 1.0.0

The first release of the package SPsimSeq, which is only available on Github. Included are both .tar.gz and .zip installation files. Before you install the package, please make sure all dependencies are installed as well.

# Install bioconductor if necessary
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install()
# Install dependencies from Bioconductor
BiocManager::install(c("SingleCellExperiment", "edgeR"))
# Install dependencies from CRAN
install.packages(c("MASS", "Hmisc", "fitdistrplus"))

For Windows

• download the file SPsimSeq_1.0.0.zip
• From R, use the following code for installation:

install.packages("path/to/SPsimSeq_1.0.0.zip", type = "binary", repos = NULL)

For Linux/Mac

• download the file SPsimSeq_1.0.0.tar.gz
• From R, use the following code for installation

install.packages("path/to/SPsimSeq_1.0.0.tar.gz", type = "source", repos = NULL)