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This repository was archived by the owner on Feb 6, 2024. It is now read-only.

Beta version 1.6.beta

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@bqminh bqminh released this 07 May 10:14

Notable new features:

  • Polymorphism-aware models accounting for incomplete lineage sorting (code contributed by Dominik Schrempf).
  • Lie Markov and non-reversible models (code contributed by Michael Woodhams).
  • Heterotachy models accounting for rate variation across sites and lineages.
  • Xeon Phi Knights Landing (AVX-512) support with 2X or more speedup.
  • New option -fast to match the speed of FastTree program while still obtaining better trees [Experimental].

New features:

  • -wql option now prints quartet area and corner in .quartetlh file (requested by Karen Meusemann).
  • Support GENE resampling (-bspec GENE) and GENESITE resampling (-bspec GENESITE) for standard bootstrap with partition models.
  • Sequential and multicore versions are merged, thus iqtree-omp executable becomes iqtree.

Bugfixes (inherited from 1.5.5-beta):

  • Likelihood underflow for large multifurcating trees (e.g. consensus tree) (reported by Giap Nguyen).
  • Crash with -minsupnew option (reported by Longzhi Tan).
  • Compilation with gcc under Mac (thanks @ilovezfs).
  • Crash with -nni1 for partition model -spp (reported by Diep).