This repository was archived by the owner on Feb 6, 2024. It is now read-only.
Beta version 1.7-beta7
Pre-release
Pre-release
- Fix crash with
--scffor rooted tree (reported by Aaron Liston). --cf-verboseto print details about gCF for each gene tree (.cf.stat_treefile) and sCF for each locus (.cf.stat_locifile).- Parallelised sCF computation.
--bisymtest-remove-bad[-good]will write.good.nexor.bad.nexpartition file (requested by Renee Catullo).- Ancestral sequence reconstruction (
-asr) now works when there are absent state(s). - Bug in eigen decomposition and matrix exponentiation for Lie Markov models.