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CI-1125 - Select sample ids when running#194

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nathanthorpe merged 2 commits intoCirroBio:mainfrom
break-through-cancer:main
Mar 18, 2026
Merged

CI-1125 - Select sample ids when running#194
nathanthorpe merged 2 commits intoCirroBio:mainfrom
break-through-cancer:main

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@dimalvovs
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This pull request adds support for specifying a list of source sample IDs when running an analysis on a dataset. This enhancement allows users to define which samples should be used as input for the analysis, providing greater flexibility and control.

Enhancement to analysis input selection:

  • Added a new source_sample_ids parameter (a list of sample IDs) to the run_analysis method in dataset.py, allowing users to specify which samples to use as input for the analysis.
  • Updated the docstring for run_analysis to document the new source_sample_ids parameter.
  • Modified the API request within run_analysis to include the source_sample_ids parameter when creating a new analysis.

@nathanthorpe nathanthorpe changed the title select sample ids when running CI-1125 - Select sample ids when running Mar 16, 2026
@nathanthorpe
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nathanthorpe commented Mar 16, 2026

Thanks for adding, could you also bump the version to 1.10.2?

@nathanthorpe nathanthorpe merged commit e05c4ac into CirroBio:main Mar 18, 2026
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2 participants