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@clingen-sthlm clingen-sthlm released this 30 Jun 06:23
v73.0.1
c41149b

add error handling to fastq clean (#4206)(patch)

Description

Closes #3817
Adds error handling to the CLI command cg compress clean fastq so that any exception raised when cleaning a single sample is caught and logged without affecting the cleaning of other samples. Additionally, adds a check that verifies that a sample is not part of a newer case before cleaning.

Added

  • Error handling

Changed

  • The way samples to clean are fetched, now we verify if they belong to a case that is not cleanable.

Co-authored-by: eliott eliottob6@gmail.com
Co-authored-by: EliottBo 112384714+eliottBo@users.noreply.github.com

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