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Release v74.1.3

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@clingen-sthlm clingen-sthlm released this 17 Jul 08:13

Refactor sample sheet entry creation (#4510)(patch)

Description

Closes Clinical-Genomics/pipeline-integration#19
Refactors the Nextflow sample sheet creation in the pipeline integration flow so that it does not need any Pydantic base model for its creation.

Added

  • Taxprofiler sample sheet creator

Changed

  • Validation for existence of fastqfiles relies exclusively on the input fetcher, not in the sample sheet
  • The return type of _get_paired_read_paths changed to a tuple iterator