Release v74.1.3
Refactor sample sheet entry creation (#4510)(patch)
Description
Closes Clinical-Genomics/pipeline-integration#19
Refactors the Nextflow sample sheet creation in the pipeline integration flow so that it does not need any Pydantic base model for its creation.
Added
- Taxprofiler sample sheet creator
Changed
- Validation for existence of fastqfiles relies exclusively on the input fetcher, not in the sample sheet
- The return type of
_get_paired_read_pathschanged to a tuple iterator