Release v75.0.5

clingen-sthlm released this 31 Jul 08:47

2a46d37

DEV - Start Taxprofiler analyses using pipeline integration flow (#4509)(patch)

Description

Development branch for integrating Taxprofiler to the new AnalysisStarter flow
To be merged with Clinical-Genomics/servers#1676

Added

Class TaxprofilerParamsFileCreator
Base model TaxprofilerParameters inheriting from WorkflowParameters (empty as no extra parameters are needed)
Taxprofiler to configurator factory and to analysis starter factory
Dev cli commands:
- dev_config_case
- dev_run
- dev_start
- dev_start_available
Tests for new cli commands

Changed

Move the constructor from the child classes to the parent ParamsFileCreator. This constructor receives only the servers params file path. Override only in raredisease as it needs store and LIMS

Fixed

Enhance tests and fixtures of analysis start workflow

Co-authored-by: Linnéa Löfdahl linnea.lofdahl@scilifelab.se

Assets 2