Skip to content

Removed deprecated code, unfreezed pymongo lib and Python 3.11 in Dockerfile

Choose a tag to compare

@northwestwitch northwestwitch released this 09 Nov 09:29

[1.7]

Added

  • Integration test with MongoDB v7

Changed

  • Moved tests and coverage from Travis to GitHub actions
  • Updated python version and versions of some GitHub actions
  • Unfreeze cyvcf2 lib to be able to install the software with Python>=3.8
  • Installation instructions on README page to install mutacc using Python 3.8
  • Unfreeze pymongo requirement and removed deprecated pymongo code to support latest version of MongoDB
  • Updated pythin version to 3.11 in Dockerfile
  • Updated MongoDB version to 7 in docker-compose.yml file

Fixed

  • Badge on Readme page
  • GitHub action to push the right image to Docker Hub
  • Replaced deprecated pkg_resources lib with importlib_resources
  • Path to app in tests_and_coverage.yml, coveralls step