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@RalfG RalfG released this 14 Nov 22:42
v3.8.0
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Learn about vigilant mode.

New and improved 🚀

  • New models for non-tryptic peptides and immunopeptides! (PR #137)
    Checkout our preprint for more info: https://doi.org/10.1101/2021.11.02.466886
  • Support for Windows! Just run pip install ms2pip in your Windows terminal, and start predicting. (PR #151)

Bugfixes 🐛

  • In DLIB output, a value is now written to the isDecoy column. Fixes downstream readout of protein information. (#140, PR #152)

Refactoring and minor changes 🔧

  • Implementation of .xgboost model files directly is now supported, no dump to C and compilation required. (PR #137)

New prediction models

Model Current version Train-test dataset (unique peptides) Evaluation dataset (unique peptides) Median Pearson correlation on evaluation dataset
HCD2021 v20210416 [Combined dataset] (520 579) PXD008034 (35 269) 0.932361
Immuno-HCD v20210316 [Combined dataset] (460191) PXD005231 (HLA-I) (46 753)
PXD020011 (HLA-II) (23 941)		 0.963736
0.942383
Assets 2
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