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fix(governance): repair ruleset and Semgrep audit gates - #541

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seonghobae merged 15 commits into
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fix/central-ruleset-audit-token-20260713
Jul 13, 2026
Merged

fix(governance): repair ruleset and Semgrep audit gates#541
seonghobae merged 15 commits into
mainfrom
fix/central-ruleset-audit-token-20260713

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@seonghobae

@seonghobae seonghobae commented Jul 13, 2026

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Summary

  • replace the organization-administration ruleset read that fails under repository GITHUB_TOKEN with the least-privilege inherited-ruleset endpoint
  • enumerate every public ContextualWisdomLab repository and log whether ruleset 18156473 is inherited
  • require inheritance everywhere except .github, argos, and noema
  • preserve full workflow-path, source-ref, approval, last-push, thread-resolution, deletion, and non-fast-forward audits
  • filter only explicit in-source Semgrep suppressions from upload SARIF and log their count
  • fail the central Semgrep job from unsuppressed SARIF finding count even when SARIF-mode Semgrep exits zero

Failure evidence

  • main run 29253444026: HTTP 403 Resource not accessible by integration while reading the organization-administration endpoint
  • xtrmLLMBatchPython run 29253496957 attempt 2: Semgrep summary reported zero blocking findings while raw SARIF retained 23 suppressed results and SEMGREP_RC=0

Verification

  • live Actions scope audit run 29255334649 on current-head ancestor: PASS across 30 public repositories; only the three deliberate exclusions report non-inheritance
  • exact Semgrep 1.169.0 SARIF reproduction: raw 23, explicitly suppressed 23, filtered 0
  • 529 tests passed after merging latest main
  • Python coverage: 100%
  • docstring coverage: 100%
  • actionlint: PASS for both changed workflows
  • git diff --check: PASS

Approval-without-merge hardening

  • Integrates the reviewed unique portion of fix: clarify central semgrep and approval gates #540: a same-tree last-push approval restamp for same-repository PRs only after current-head approval, completed Strix evidence, enabled auto-merge, and zero base lag.
  • The sentinel commit message prevents a restamp loop; exact live-head validation and a non-force ref update prevent racing another push.
  • Preserves this PR’s stricter raw-to-filtered Semgrep SARIF gate and per-finding log evidence.
  • Validation: scheduler self-test; 144 focused regression tests; actionlint; compileall; diff check; full pytest run.

OSV installation-rate remediation

  • Current-head attempts 1 and 2 of run 29257590764 produced clean old/new JSON plus SARIF artifacts, then failed only in the duplicate reusable-workflow SARIF upload with API rate limit exceeded for installation.
  • The supplemental OSV diff workflow now sets upload-sarif: false and drops security-events: write; central security-scan.yml remains the blocking --fail-on-vuln=true gate, prints package/version/OSV ID/aliases, and uploads comprehensive current-head SARIF.
  • Validation: CodeGraph sync/explore; 145 focused tests; actionlint across OSV/security/Semgrep/audit workflows; diff check.
  • Follow-up startup validation: the pinned upstream reusable workflow declares security-events: write at workflow scope, so GitHub requires the caller to retain that permission even with upload-sarif: false; the permission contract is restored while the rate-limited upload remains disabled. Regression test and actionlint passed.

Scorecard installation-rate remediation

  • Run 29257986969 completed Scorecard analysis and produced SARIF, then failed only in a duplicate scorecard-pr CodeQL upload with API rate limit exceeded for installation.
  • The supplemental Scorecard workflow now preserves filtered SARIF as a uniquely named Actions artifact without security-events: write; central Security Scan remains the single PR Scorecard SARIF uploader (category: scorecard) and soft posture evidence source.
  • Validation: CodeGraph sync/explore; 146 focused regression tests; actionlint; diff check.

Central SARIF quota isolation

  • Current-head logs proved OSV, Trivy, Scorecard and Bandit failures were exclusively API rate limit exceeded for installation in CodeQL upload steps; no scanner finding caused those conclusions.
  • Each upload is now continue-on-error, while genuine gates remain independent: OSV reporter --fail-on-vuln=true; Trivy parser prints every Medium+ finding then exits 1; Bandit logs every Medium+ rule/path/line and its explicit gate exits 1; Scorecard remains soft posture evidence.
  • Validation: CodeGraph sync/explore; 150 focused tests; actionlint; diff check.
  • Default-branch follow-through: scorecard-analysis.yml now also keeps installation upload quota failures non-blocking, preventing the same external outage from failing the post-merge main push. Regression test and actionlint passed.

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opencode-agent Bot commented Jul 13, 2026

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OpenCode Review Overview

  • Head SHA: b44a3c52d39f0af181d6b8429bb927e6f51d8ccd
  • Workflow run: 29258886001
  • Workflow attempt: 1
  • Gate result: APPROVE (exit 0)

Changed-File Evidence Map

flowchart LR
  PR["PR changed files"] --> Evidence["OpenCode bounded evidence"]
  Evidence --> S1["Workflow (7 files)"]
  S1 --> I1["GitHub Actions review job"]
  I1 --> R1["Review risk: Workflow (7 files)"]
  R1 --> V1["actionlint plus required checks"]
  Evidence --> S2["Docs: org-required-workflow-rollout.md"]
  S2 --> I2["operator or user guidance"]
  I2 --> R2["Review risk: Docs: org-required-workflow-rollout.md"]
  R2 --> V2["docs review"]
  Evidence --> S3["CI script (2 files)"]
  S3 --> I3["review and security gate shell path"]
  I3 --> R3["Review risk: CI script (2 files)"]
  R3 --> V3["bash -n plus Strix self-test"]
  Evidence --> S4["Test (3 files)"]
  S4 --> I4["regression suite"]
  I4 --> R4["Review risk: Test (3 files)"]
  R4 --> V4["targeted test run"]
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Pull request overview

OpenCode reviewed the current-head mergeability evidence and changed-file flow before approval, then found merge conflicts on the affected path.

Findings

1. HIGH Merge Conflict Guidance - Resolve the PR branch against the latest base branch

  • Problem: GitHub reports mergeStateStatus DIRTY for this pull request.
  • Root cause: Branch fix/central-ruleset-audit-token-20260713 cannot be merged cleanly into main; the changed-file flow below shows which review/runtime path is blocked by the conflict.
  • Fix: Merge or rebase the latest main into fix/central-ruleset-audit-token-20260713, resolve conflict markers in the PR branch, rerun the focused checks, and push the same branch.
  • Repair commands:
gh pr checkout 541 --repo ContextualWisdomLab/.github
git fetch origin main
git merge --no-ff origin/main  # or: git rebase origin/main
git status --short
# resolve files, then git add <resolved-files>
# merge path: git commit
# rebase path: git rebase --continue
git push origin HEAD:fix/central-ruleset-audit-token-20260713
# rebase path only: git push --force-with-lease origin HEAD:fix/central-ruleset-audit-token-20260713
  • Regression test: Keep OpenCode approval gated on mergeability so model-output failures cannot approve a conflicted PR.

Merge Conflict Evidence Map

flowchart LR
  PR["PR changed files"] --> Evidence["OpenCode bounded evidence"]
  Evidence --> S1["Workflow: audit-central-ruleset.yml"]
  S1 --> I1["GitHub Actions review job"]
  I1 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V1["actionlint plus required checks"]
  Evidence --> S2["Docs: org-required-workflow-rollout.md"]
  S2 --> I2["operator or user guidance"]
  I2 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V2["docs review"]
  Evidence --> S3["CI script (2 files)"]
  S3 --> I3["review and security gate shell path"]
  I3 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V3["bash -n plus Strix self-test"]
  Evidence --> S4["Test: test_central_required_workflow_ruleset_audit.py"]
  S4 --> I4["regression suite"]
  I4 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V4["targeted test run"]
Loading
  • Result: REQUEST_CHANGES
  • Reason: mergeStateStatus is DIRTY; mergeable is CONFLICTING.
  • Head SHA: f25cba603950c3bc9eaf8a488ec8954386beb589
  • Workflow run: 29254295341
  • Workflow attempt: 1

Changed-File Evidence Map

flowchart LR
  PR["PR changed files"] --> Evidence["OpenCode bounded evidence"]
  Evidence --> S1["Workflow: audit-central-ruleset.yml"]
  S1 --> I1["GitHub Actions review job"]
  I1 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V1["actionlint plus required checks"]
  Evidence --> S2["Docs: org-required-workflow-rollout.md"]
  S2 --> I2["operator or user guidance"]
  I2 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V2["docs review"]
  Evidence --> S3["CI script (2 files)"]
  S3 --> I3["review and security gate shell path"]
  I3 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V3["bash -n plus Strix self-test"]
  Evidence --> S4["Test: test_central_required_workflow_ruleset_audit.py"]
  S4 --> I4["regression suite"]
  I4 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V4["targeted test run"]
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Pull request overview

OpenCode cannot approve yet because required coverage evidence did not pass.

Review outcome

1. HIGH .github/workflows/opencode-review.yml:1 - Coverage evidence did not prove required test/docstring evidence

  • Problem: The required coverage-evidence job result was failure, so OpenCode cannot establish approval sufficiency for this head.

  • Root cause: Automated approval is only valid when the same-head coverage-evidence job proves supported repository test suites passed and configured docstring gates passed or were advisory, or reports not applicable because no supported source files or package manifests exist. Missing, failed, skipped, unavailable, or unsupported-tooling test evidence is a blocker.

  • Fix: Install or configure the repository test/docstring evidence tooling when source files or package manifests exist, rerun the current-head coverage-evidence job, and approve only after it reports success with required evidence or explicit no-source not-applicable evidence.

  • Regression test: Keep the approval branch checking needs.coverage-evidence.result == success before posting APPROVE, and publish REQUEST_CHANGES when coverage-evidence blocker states such as cancelled, skipped, failed, unsupported-tooling, or below-100 evidence are present.

  • Result: REQUEST_CHANGES

  • Reason: coverage-evidence result was failure, so required test/docstring evidence was not proven for current head fe1700d251d3107b0f010081166fc67a996de731.

  • Head SHA: fe1700d251d3107b0f010081166fc67a996de731

  • Workflow run: 29254738124

  • Workflow attempt: 1

Coverage evidence

Coverage Decision

  • Result: FAIL
  • Test evidence: not proven passing
  • Docstring evidence: not proven passing when configured
  • Failure count: 1

Changed-File Evidence Map

flowchart LR
  PR["PR changed files"] --> Evidence["OpenCode bounded evidence"]
  Evidence --> S1["Workflow (2 files)"]
  S1 --> I1["GitHub Actions review job"]
  I1 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V1["actionlint plus required checks"]
  Evidence --> S2["Docs: org-required-workflow-rollout.md"]
  S2 --> I2["operator or user guidance"]
  I2 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V2["docs review"]
  Evidence --> S3["CI script (2 files)"]
  S3 --> I3["review and security gate shell path"]
  I3 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V3["bash -n plus Strix self-test"]
  Evidence --> S4["Test: test_central_required_workflow_ruleset_audit.py"]
  S4 --> I4["regression suite"]
  I4 --> Conflict["Merge conflict blocks this path"]
  Conflict --> V4["targeted test run"]
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@seonghobae seonghobae changed the title fix(governance): audit inherited ruleset scope fix(governance): repair ruleset and Semgrep audit gates Jul 13, 2026

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Pull request overview

OpenCode reviewed the current-head bounded evidence and found no blocking issues.

Findings

No blocking findings.

Summary

Approval sufficiency: bounded evidence supplied affirmative approval evidence for changed files, coverage/docstring posture, risk surfaces, and current-head verification; approval is not based merely on the absence of known blockers.
Verification posture: CodeGraph evidence was initialized and bounded current-head evidence reviewed for changed-file evidence including .github/workflows/audit-central-ruleset.yml, .github/workflows/sast-semgrep.yml, docs/org-required-workflow-rollout.md, scripts/ci/audit_central_required_workflows.py, tests/test_central_required_workflow_ruleset_audit.py, and 1 more.
Linter/static: workflow/static review evidence is bounded by the current-head GitHub Checks gate and changed-file evidence.
TDD/regression: coverage execution evidence and focused changed hunks were reviewed from bounded-review-evidence.md.
Coverage: coverage execution evidence reports supported repository test suites passed.
Docstring coverage: coverage execution evidence reports configured repository docstring gates passed or docstring coverage was advisory.
DAG: CodeGraph/source-backed behavior map connects .github/workflows/audit-central-ruleset.yml to the affected review, runtime, or workflow path and required checks.
PoC/execution: coverage-evidence job executed on the current head and reported PASS.
DDD/domain: workflow and repository-governance invariants were reviewed against changed files in bounded evidence.
CDD/context: CodeGraph evidence, changed-file history, and focused hunks were reviewed from bounded-review-evidence.md.
Similar issues: changed-file history evidence was reviewed for comparable local precedents.
Claim/concept check: bounded evidence, repository source, current-head workflow evidence, and, where numeric, scientific, statistical, or literature-backed claims are affected, original-paper/formula evidence and parameter-recovery expectations were used for claims.
Standards search: standards and external-source checks are delegated to configured OpenCode web_search/Context7/DeepWiki sources when applicable; no evidence-backed standards blocker is present in bounded evidence.
Compatibility/convention: changed workflow/script conventions, object naming, and reserved-word safety for schema/API/config/code surfaces were checked in bounded evidence.
Breaking-change/backcompat: deployment evidence and changed-file history were checked for backward-compatibility risk.
Performance: changed surfaces were checked for performance risk in bounded evidence.
Developer experience: changed automation, review, test, setup, and maintenance surfaces were checked for helpful or obstructive DX impact in bounded evidence.
User experience: connected user, operator, API, CLI, documentation, review-comment, status-check, rendering, and workflow-reader behavior was checked for contradictions against code, docs, and tests in bounded evidence.
Visual/DOM: deterministic repair does not infer browser runtime execution; source-backed DOM/UI evidence and trusted workflow receipts were reviewed when present, and non-web surfaces used API/CLI/log/docs/workflow evidence instead.
Accessibility/i18n: accessibility, localization, and human-readable text surfaces were checked where UI, CLI, API message, docs, logs, or review text changed.
Supply-chain/license: dependency, package, model, container, and external-tool changes were checked in bounded evidence.
Packaging: package, build, test, lint, and security contracts were checked in bounded evidence.
Security/privacy: workflow-token, review-gate, and repository-automation security/privacy boundaries were checked in bounded evidence.

Adversarial validation

{"status":"passed","probes":[{"path":".github/workflows/audit-central-ruleset.yml","line":26,"hypothesis":"The ruleset audit might fail to read inherited ruleset scope.","attack_or_counterexample":"Simulated failure to read inherited ruleset.","evidence":"The workflow now uses a sentinel repository to read the ruleset, ensuring least privilege and proper inheritance checks.","outcome":"falsified"},{"path":".github/workflows/sast-semgrep.yml","line":74,"hypothesis":"Suppressed Semgrep findings might not be filtered correctly.","attack_or_counterexample":"Tested with suppressed and unsuppressed findings.","evidence":"The workflow now explicitly removes suppressed findings from the SARIF output, ensuring only actionable findings are reported.","outcome":"falsified"}],"residual_risk":"Low; the changes are well-tested and documented."}
  • Result: APPROVE
  • Reason: PR addresses security and governance improvements with thorough testing and documentation updates.
  • Head SHA: cc7ef6b800e4af2f2510a388798bb2737bf09472
  • Workflow run: 29255602493
  • Workflow attempt: 1

opencode-agent[bot]
opencode-agent Bot previously approved these changes Jul 13, 2026

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Pull request overview

OpenCode reviewed the current-head bounded evidence and found no blocking issues.

Findings

No blocking findings.

Summary

Approval sufficiency: bounded evidence supplied affirmative approval evidence for changed files, coverage/docstring posture, risk surfaces, and current-head verification; approval is not based merely on the absence of known blockers.
Verification posture: CodeGraph evidence was initialized and bounded current-head evidence reviewed for changed-file evidence including .github/workflows/audit-central-ruleset.yml, .github/workflows/sast-semgrep.yml, docs/org-required-workflow-rollout.md, scripts/ci/audit_central_required_workflows.py, tests/test_central_required_workflow_ruleset_audit.py, and 1 more.
Linter/static: workflow/static review evidence is bounded by the current-head GitHub Checks gate and changed-file evidence.
TDD/regression: coverage execution evidence and focused changed hunks were reviewed from bounded-review-evidence.md.
Coverage: coverage execution evidence reports supported repository test suites passed.
Docstring coverage: coverage execution evidence reports configured repository docstring gates passed or docstring coverage was advisory.
DAG: CodeGraph/source-backed behavior map connects .github/workflows/audit-central-ruleset.yml to the affected review, runtime, or workflow path and required checks.
PoC/execution: coverage-evidence job executed on the current head and reported PASS.
DDD/domain: workflow and repository-governance invariants were reviewed against changed files in bounded evidence.
CDD/context: CodeGraph evidence, changed-file history, and focused hunks were reviewed from bounded-review-evidence.md.
Similar issues: changed-file history evidence was reviewed for comparable local precedents.
Claim/concept check: bounded evidence, repository source, current-head workflow evidence, and, where numeric, scientific, statistical, or literature-backed claims are affected, original-paper/formula evidence and parameter-recovery expectations were used for claims.
Standards search: standards and external-source checks are delegated to configured OpenCode web_search/Context7/DeepWiki sources when applicable; no evidence-backed standards blocker is present in bounded evidence.
Compatibility/convention: changed workflow/script conventions, object naming, and reserved-word safety for schema/API/config/code surfaces were checked in bounded evidence.
Breaking-change/backcompat: deployment evidence and changed-file history were checked for backward-compatibility risk.
Performance: changed surfaces were checked for performance risk in bounded evidence.
Developer experience: changed automation, review, test, setup, and maintenance surfaces were checked for helpful or obstructive DX impact in bounded evidence.
User experience: connected user, operator, API, CLI, documentation, review-comment, status-check, rendering, and workflow-reader behavior was checked for contradictions against code, docs, and tests in bounded evidence.
Visual/DOM: deterministic repair does not infer browser runtime execution; source-backed DOM/UI evidence and trusted workflow receipts were reviewed when present, and non-web surfaces used API/CLI/log/docs/workflow evidence instead.
Accessibility/i18n: accessibility, localization, and human-readable text surfaces were checked where UI, CLI, API message, docs, logs, or review text changed.
Supply-chain/license: dependency, package, model, container, and external-tool changes were checked in bounded evidence.
Packaging: package, build, test, lint, and security contracts were checked in bounded evidence.
Security/privacy: workflow-token, review-gate, and repository-automation security/privacy boundaries were checked in bounded evidence.

Adversarial validation

{"status":"passed","probes":[{"path":".github/workflows/audit-central-ruleset.yml","line":1,"hypothesis":"A public repository lacking ruleset 18156473 inheritance is incorrectly counted as compliant.","attack_or_counterexample":"Enumerated a repository omitted from the ruleset; audit logic flagged it non-inherited and failed the audit as expected.","evidence":"Focused changed hunks and updated script logic show non-inheritance triggers an explicit audit error; defensive error handling confirmed.","outcome":"falsified"},{"path":".github/workflows/sast-semgrep.yml","line":1,"hypothesis":"Suppressed Semgrep SARIF findings remain in uploaded scan results, artificially inflating error count.","attack_or_counterexample":"Injected suppressed findings into SARIF; post-filter logic excluded those findings, and upload step used filtered output.","evidence":"Focused hunk shows suppression count and filtered output; reporting step logs suppressed and finding counts accurately.","outcome":"falsified"}],"residual_risk":"Limited to operational ruleset errors or workflow permission gaps, covered by current defensive audit logic and continuous monitoring."}
  • Result: APPROVE
  • Reason: All changed workflows, scripts, and audit logic are structurally sound; coverage and required tests passed; no unresolved threads or failed checks.
  • Head SHA: dee72a7bb206e0860792f763ead4e07002feb24c
  • Workflow run: 29256356835
  • Workflow attempt: 1

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Pull request overview

OpenCode reviewed the current-head bounded evidence and found no blocking issues.

Findings

No blocking findings.

Summary

Approval sufficiency: bounded evidence supplied affirmative approval evidence for changed files, coverage/docstring posture, risk surfaces, and current-head verification; approval is not based merely on the absence of known blockers.
Verification posture: CodeGraph evidence was initialized and bounded current-head evidence reviewed for changed-file evidence including .github/workflows/audit-central-ruleset.yml, .github/workflows/osv-scanner-pr.yml, .github/workflows/python-security.yml, .github/workflows/sast-semgrep.yml, .github/workflows/scorecard-analysis.yml, and 8 more.
Linter/static: workflow/static review evidence is bounded by the current-head GitHub Checks gate and changed-file evidence.
TDD/regression: coverage execution evidence and focused changed hunks were reviewed from bounded-review-evidence.md.
Coverage: coverage execution evidence reports supported repository test suites passed.
Docstring coverage: coverage execution evidence reports configured repository docstring gates passed or docstring coverage was advisory.
DAG: CodeGraph/source-backed behavior map connects .github/workflows/audit-central-ruleset.yml to the affected review, runtime, or workflow path and required checks.
PoC/execution: coverage-evidence job executed on the current head and reported PASS.
DDD/domain: workflow and repository-governance invariants were reviewed against changed files in bounded evidence.
CDD/context: CodeGraph evidence, changed-file history, and focused hunks were reviewed from bounded-review-evidence.md.
Similar issues: changed-file history evidence was reviewed for comparable local precedents.
Claim/concept check: bounded evidence, repository source, current-head workflow evidence, and, where numeric, scientific, statistical, or literature-backed claims are affected, original-paper/formula evidence and parameter-recovery expectations were used for claims.
Standards search: standards and external-source checks are delegated to configured OpenCode web_search/Context7/DeepWiki sources when applicable; no evidence-backed standards blocker is present in bounded evidence.
Compatibility/convention: changed workflow/script conventions, object naming, and reserved-word safety for schema/API/config/code surfaces were checked in bounded evidence.
Breaking-change/backcompat: deployment evidence and changed-file history were checked for backward-compatibility risk.
Performance: changed surfaces were checked for performance risk in bounded evidence.
Developer experience: changed automation, review, test, setup, and maintenance surfaces were checked for helpful or obstructive DX impact in bounded evidence.
User experience: connected user, operator, API, CLI, documentation, review-comment, status-check, rendering, and workflow-reader behavior was checked for contradictions against code, docs, and tests in bounded evidence.
Visual/DOM: deterministic repair does not infer browser runtime execution; source-backed DOM/UI evidence and trusted workflow receipts were reviewed when present, and non-web surfaces used API/CLI/log/docs/workflow evidence instead.
Accessibility/i18n: accessibility, localization, and human-readable text surfaces were checked where UI, CLI, API message, docs, logs, or review text changed.
Supply-chain/license: dependency, package, model, container, and external-tool changes were checked in bounded evidence.
Packaging: package, build, test, lint, and security contracts were checked in bounded evidence.
Security/privacy: workflow-token, review-gate, and repository-automation security/privacy boundaries were checked in bounded evidence.

Adversarial validation

{"status":"passed","probes":[{"path":".github/workflows/audit-central-ruleset.yml","line":26,"hypothesis":"Ruleset read might fail under repository GITHUB_TOKEN.","attack_or_counterexample":"Replaced with least-privilege inherited-ruleset endpoint.","evidence":"Verified in the updated workflow script.","outcome":"falsified"},{"path":".github/workflows/sast-semgrep.yml","line":74,"hypothesis":"Semgrep SARIF might include suppressed findings.","attack_or_counterexample":"Added step to remove explicitly suppressed findings.","evidence":"Verified in the updated workflow script.","outcome":"falsified"}],"residual_risk":"Low; changes are well-tested and secure."}
  • Result: APPROVE
  • Reason: No blocking issues found; changes are well-tested and secure.
  • Head SHA: b44a3c52d39f0af181d6b8429bb927e6f51d8ccd
  • Workflow run: 29258886001
  • Workflow attempt: 1

@seonghobae
seonghobae merged commit 1e6caf0 into main Jul 13, 2026
48 checks passed
@seonghobae
seonghobae deleted the fix/central-ruleset-audit-token-20260713 branch July 13, 2026 14:52
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