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OneMap version 3.0.0

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@Cristianetaniguti Cristianetaniguti released this 25 Nov 19:31
· 116 commits to main since this release
  • New preprint including OneMap updates:

Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Mollinari, M., Da, G., Pereira, S., Riera-Lizarazu, O., Lau, J., Byrne, D., de Siqueira Gesteira, G., De, T., Oliveira, P., Ferreira, G. C., &; Franco Garcia, A. A. Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks. BioRxiv. https://doi.org/10.1101/2022.11.24.517847

  • Functions to filter markers based on two-points estimations: filter_2pts_gaps and rf_snp_filter_onemap
  • Optimization of find_bins and map_avoid_unlinked
  • New function to save RAM memory after filters: keep_only_selected_mks
  • Review spell_check
  • Avoid -Inf likelihood resulted by increasing the tolerance value
  • Fix bug in mds_onemap