NEXT_TASKS: record syntrophy/DIET causal batch (#251)#252
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Add the 4-record batch (000183/188/189/297) to the causal "done so far" list and note that 000297 yielded no justifiable edge (parallel proposed DIET pathways) and that the 6 already-wired matches were left as-is. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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Pull request overview
Updates NEXT_TASKS.md to record completion of the syntrophy/DIET causal-graph curation batch (#251) and reflect the updated “done” status and next steps for ongoing causal-edge work.
Changes:
- Add the 4-record syntrophy/DIET batch (000183/188/189/297) to the causal-graph “Done so far” list, including notes on hypothesized mediator edges and knowledge gaps.
- Update the stated count of records carrying
downstreamcausal edges and preserve notes about canonical taxon IDs / Edison grounding pitfalls.
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| (000188, 2 HYPOTHESIZED mediator edges + KG), `Syntrophomonas_Methanococcus_Butyrate_Growth_Coordination_Coculture` | ||
| (000189, 1 edge + KG), `DIETsimp_Lignocellulose_to_Methane_DIET_Consortia` (000297, NO edge | ||
| justified — parallel proposed DIET pathways — KG only). The 6 already-wired matches | ||
| (000031–033 DIET, 000068–070 syntrophies) were left as-is. ~65/304 records now carry |
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Doc-only: add the 4-record syntrophy/DIET batch (000183/188/189/297) to the causal-graph done list (
61→65/304), noting 000297 yielded no justifiable edge (parallel proposed DIET pathways) and the 6 already-wired matches (000031–033, 000068–070) were left as-is. 🤖 Generated with Claude Code