NEXT_TASKS: log pending enrichment of single-edge DIET/syntrophy records#253
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Record a pending causal thread: six 2-node records carry one hand-authored donor→acceptor downstream edge but have not had an Edison causal-graph pass — DIET trio 000031/032/033 and syntrophies 000068/069/070. A full run could add mechanistic nodes/edges (conductive pili / OmcS-OmcZ cytochromes, conductive-material mediation, formate-vs-H2 routes, feedback edges). Also notes the stray untracked *.yaml.bak backups in kb/communities/ (gitignored; target the .yaml files). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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Pull request overview
Updates NEXT_TASKS.md to capture a pending curation/workflow item: six existing 2-node DIET/syntrophy community records already have a single hand-authored donor→acceptor downstream edge but have not yet been enriched via a full Edison causal-graph run. This documents which records are affected, what additional mechanistic structure a full run might contribute, and a reminder about stray local *.yaml.bak backups when curating.
Changes:
- Adds a “PENDING” note enumerating the six single-edge DIET/syntrophy records (000031–033, 000068–070) and the rationale for a full causal-graph enrichment pass.
- Documents the intended workflow command (
just research-community-causal …) and cautions to target tracked.yamlfiles rather than untracked*.yaml.bakbackups.
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Doc-only. Records a pending causal thread: six 2-node records already carry one hand-authored donor→acceptor
downstreamedge but have not had an Edison causal-graph pass — DIET trio 000031/032/033 and syntrophies 000068/069/070. A full run could add mechanistic nodes/edges (conductive pili / OmcS-OmcZ cytochromes, conductive-material mediation, formate-vs-H2 routes, feedback edges) beyond the single existing edge. Also notes the stray untracked*.yaml.bakbackups inkb/communities/(gitignored; target the.yamlfiles). Not run yet. 🤖 Generated with Claude Code