Microhaplotopia Container

A Docker container for microhaplotype analysis using the microhaplotopia R package (emc-edits branch), built on Rocker/tidyverse.

Quick Start

Build the Container

docker build -t bnguyen29/microhaplotopia .

Run Interactive R Session

docker run -it bnguyen29/microhaplotopia R

Run with Volume Mount

docker run -v $(pwd):/workspace -w /workspace -it bnguyen29/microhaplotopia R

Features

• Base: rocker/tidyverse:4.5.1
• Main Package: microhaplotopia (emc-edits branch)
• Current microhaplotopia Commit: 64b0b1fa0dd830856018d435bcf9c380c9370f66

Testing

Verify the installation:

docker run --rm bnguyen29/microhaplotopia Rscript -e "library(microhaplotopia); packageVersion('microhaplotopia')"

Test with a basic command (replace with a real example if available):

docker run --rm bnguyen29/microhaplotopia Rscript -e "library(microhaplotopia); ?microhaplotopia"

Build and Push to Docker Hub

For production deployment:

docker buildx build --platform linux/amd64 -t bnguyen29/microhaplotopia:latest --push .

References

• microhaplotopia GitHub (emc-edits branch)
• Rocker/tidyverse