v1.0.0
Pre-release
Pre-release
Initial release of UBR (Ultraplex-Bowtie2-RNAFramework) pipeline.
- Complete package for running data analysis on chemical mapping mutational profiling experiments for RNA.
- Parallelization of each step as appropriate for a SLURM cluster
- Stress-tested on runs including up to 1M distinct sequences, up to 5B paired end reads.
- Most code is in Python, wrapping around other packages.
- MATLAB needed for final steps including data visualization.
Important TODOs: (1) Fill out README.md, and (2) provide test example.