fix: Resolve given package file paths properly against inferred project root

[ferenc-csaky]

No description provided.

[codecov]

Codecov Report

❌ Patch coverage is 76.92308% with 3 lines in your changes missing coverage. Please review.
✅ Project coverage is 16.40%. Comparing base (1d1aca2) to head (451ddab).
⚠️ Report is 1 commits behind head on main.
✅ All tests successful. No failed tests found.

Files with missing lines	Patch %	Lines
...main/java/com/datasqrl/cli/AbstractCompileCmd.java	83.33%	2 Missing ⚠️
...java/com/datasqrl/cli/BaseOsProcessManagerCmd.java	0.00%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff              @@
##               main    #2183      +/-   ##
============================================
+ Coverage     16.32%   16.40%   +0.08%     
- Complexity     1032     1039       +7     
============================================
  Files           619      619              
  Lines         17927    17937      +10     
  Branches       2193     2193              
============================================
+ Hits           2926     2943      +17     
+ Misses        14702    14694       -8     
- Partials        299      300       +1     

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