v1.0.0 — First stable release

HowDirty v1.0.0

First stable release. All v1 roadmap items complete.

What's included

• R package — full contamination report pipeline with generate_howdirty_report(), heatmap plots, trend/comparison analysis, and pkgdown documentation site
• Docker CLI (ghcr.io/davidgz1/howdirty:latest) — run the full pipeline without R installed
• Browser app (ghcr.io/davidgz1/howdirty:app) — Shiny web interface, no coding required
• Windows launcher (launch_howdirty.bat) — double-click to start the browser app automatically

Quickstart (Windows, no coding)

1. Install Docker Desktop
2. Download launch_howdirty.bat below and double-click it
3. HowDirty opens in your browser at http://localhost:3838

Cite

D. Gomez‐Zepeda et al., Proteomics (2023). https://doi.org/10.1002/pmic.202300134

v0.8.0 — Shiny UI polish + one-click launcher

What's new

• One-click launcher — double-click launch_howdirty.bat to start the app (no command line needed)
• Shiny UI: logo in header, updated title, orange/purple theme matching the logo palette

How to use the launcher

Prerequisites: Docker Desktop must be installed.

1. Download launch_howdirty.bat below
2. Double-click it — Docker Desktop starts automatically if needed, the app opens in your browser
3. Press any key in the terminal window to stop the app when done

v0.2.1

Fixed issue with reading semicolon-separated csvs.
Complemented tutorial to avoid confusion with the Skyline report column names.

v0.1.0

Initial release before submission