Skip to content

Fix smaller issues in srun_fastsurfer.sh#671

Merged
m-reuter merged 3 commits into
Deep-MI:devfrom
dkuegler:fix/srun-debug-output
Mar 7, 2025
Merged

Fix smaller issues in srun_fastsurfer.sh#671
m-reuter merged 3 commits into
Deep-MI:devfrom
dkuegler:fix/srun-debug-output

Conversation

@dkuegler
Copy link
Copy Markdown
Member

@dkuegler dkuegler commented Mar 7, 2025

segmentation failed because gpus were not properly requested.

==> timelimit in segmentation

The main fix is line srun_fastsurfer.sh:582, but some smaller fixes as well.
Also remove extra debug output.

dkuegler added 3 commits March 4, 2025 15:20
- Increase the segmentation time limit to 15 per case

srun_fastsurfer.sh did not schedule gpu-requirements for seg in many cases, because --gpus is not --gpus-per-task
@m-reuter m-reuter merged commit e2724b3 into Deep-MI:dev Mar 7, 2025
@dkuegler dkuegler deleted the fix/srun-debug-output branch March 8, 2025 22:34
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants