Fix inconsistent file and folder permissions#719
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Addressing Deep-MI#679 "Inconsistent permissions of output directories and files". recon-all starts running by setting umask to 002. This overwrites the OS settings and forces 0o773 file permissions. Here, we decide to use the user-defined setting of the environment. Thus, all calls to recon-all must include the "-umask $(umask -p)" argument. - Add "-umask $(umask -p)" to all recon-all calls - Some formatting cleanup of recon_surf/spherically_project_wrapper.py
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Addressing #679 "Inconsistent permissions of output directories and files".
recon-all starts running by setting umask to 002.
This overwrites the OS settings and forces 0o773 file permissions. Here, we decide to use the user-defined setting of the environment. Thus, all calls to recon-all must include the "-umask $(umask -p)" argument.