Fix usage of Reorientation logic in CerebNet and HypVINN#809
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Fix Localizer typing
Fix hypothalamus reorientation (remove reorient_img function and replace with Reorientation class functionality). - Update in save_logits - Update in save_segmentation
dkuegler
changed the title
…nd fix target shape of the Reorientation.inverse
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After the changes to reorientation login in #767 , there was an incorrect assembly of the vox2vox matrix in CerebNet causing CerebNet to fail.
This PR additionally fixes a typing error in the same file (
CerebNet/data_loader/dataset.py) first reported during the development of #807 .This also fixes Reorientation in the Hypothalamus and adds compatibility for "keep" for
vox_sizeandimage_sizeconverters inarg_types.py.