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571 update paired mr-us prostate demo #582

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Merged
YipengHu merged 7 commits into from
Dec 28, 2020
Merged

571 update paired mr-us prostate demo #582

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beb1c7e
Issue #571 config updates longer train only
YipengHu Dec 26, 2020
5637e0b
Merge branch 'main' into 571-demo-weakly
YipengHu Dec 27, 2020
5b27c11
Merge branch '578-DDFallzeroinpredict' into 571-demo-weakly
YipengHu Dec 27, 2020
62e4495
Merge branch '578-DDFallzeroinpredict' into 571-demo-weakly
YipengHu Dec 27, 2020
68a6d21
Issue #571 config updated for the longer-pre-trained model
YipengHu Dec 27, 2020
b5f45b0
Merge branch 'main' into 571-demo-weakly
YipengHu Dec 27, 2020
e46442b
Issue #571 changes from the other demo revert
YipengHu Dec 28, 2020
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4 changes: 2 additions & 2 deletions demos/paired_mrus_prostate/demo_data.py
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Expand Up @@ -67,8 +67,8 @@
shutil.rmtree(MODEL_PATH)
os.mkdir(MODEL_PATH)

ZIP_PATH = "paired_mrus_prostate-ckpt"
ORIGIN = "https://github.com/DeepRegNet/deepreg-model-zoo/raw/master/paired_mrus_prostate-ckpt.zip"
ZIP_PATH = "paired_mrus_prostate_1"
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ORIGIN = "https://github.com/DeepRegNet/deepreg-model-zoo/raw/master/paired_mrus_prostate_1.zip"

zip_file = os.path.join(MODEL_PATH, ZIP_PATH + ".zip")
get_file(os.path.abspath(zip_file), ORIGIN)
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4 changes: 2 additions & 2 deletions demos/paired_mrus_prostate/demo_predict.py
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Expand Up @@ -31,7 +31,7 @@
"The prediction can also be launched using the following command.\n"
"deepreg_predict --gpu '' "
f"--config_path demos/{name}/{name}.yaml "
f"--ckpt_path demos/{name}/dataset/pretrained/weights-epoch500.ckpt "
f"--ckpt_path demos/{name}/dataset/pretrained/ckpt-5000 "
f"--log_root demos/{name} "
"--log_dir logs_predict "
"--save_png --mode test\n"
Expand All @@ -41,7 +41,7 @@

log_root = f"demos/{name}"
log_dir = "logs_predict/" + datetime.now().strftime("%Y%m%d-%H%M%S")
ckpt_path = f"{log_root}/dataset/pretrained/weights-epoch500.ckpt"
ckpt_path = f"{log_root}/dataset/pretrained/ckpt-5000"
config_path = [f"{log_root}/{name}.yaml"]
if args.test:
config_path.append("config/test/demo_paired.yaml")
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4 changes: 2 additions & 2 deletions demos/paired_mrus_prostate/paired_mrus_prostate.yaml
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Expand Up @@ -55,5 +55,5 @@ train:
shuffle_buffer_num_batch: 1 # shuffle_buffer_size = batch_size * shuffle_buffer_num_batch

# other training hyper-parameters
epochs: 500 # number of training epochs
save_period: 50 # the model will be saved every `save_period` epochs.
epochs: 5000 # number of training epochs
save_period: 1000 # the model will be saved every `save_period` epochs.