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What's Changed
- Updates transformer-based model architecture by @hlapp in #17
- Expands instructions for running BlueSTARR code, adds instructions for data pipeline by @hlapp in #22
- Adds documentation and links for downsampling by @hlapp in #23, #27, and #28
- Documentation on removing paralogous sequences by @hlapp in #24 and #27
- Preprocessing Notebook from IGVF Portal doc by @RevathyVenukuttan in #25 and @hlapp in #29
- Processing pipeline steps from read data by @hlapp in #20
- Dynamic replicate counts, pseudocount parameter, mutual-exclusivity, FASTA cleanup fixes for preprocessing scripts by @alexbarrera in #30
- Adds processing script to split counts and seqs into separate files by @hlapp in #31, thanks @yutiachen5 for review
- Polishing up README and acknowledgments for release by @hlapp in #32
New Contributors
- @alexbarrera made their first contribution in #30
Full Changelog: v0.2.0...v0.3.0