V1.0 - Pipeline release

Pipeline

• Bugfixes
• Support 3D segmentation for cytoplasm and nucleus
• Now uses dapi to perform re-alignement
• Performance improvements using concurence for quantification, drift and detection.

Viewer

• Threshold selector
• Segmentation tester for parameters

Chromatic abberations

• Calibrator to correct chromatic abberations using polynomial interpolation

Analysis

• Co-localization pipeline stable
• Pipeline metrics boards

Parameters

• JSON handling for pipeline parameters
• GUI for parameters modification
• Dynamic handling of new parameters

v0.1_release

First functional pipeline release including pipeline, viewer and analysis from 05/2025.