extend configure options for SymEngine to make sure that binutils is found + GMP/MPC/MPFR dependencies are correctly picked up by boegel · Pull Request #275 · EESSI/software-layer-scripts

boegel · 2026-07-30T10:37:53Z

fix for:

CMake Error at /cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/neoverse_v1/software/CMake/4.0.3-GCCcore-14.3.0/share/cmake-4.0/Modules/FindPackageHandleStandardArgs.cmake:227 (message):
                                       Could NOT find BFD (missing: BFD_INCLUDE_DIRS)

In addition, GMP & co were being picked up from the compat layer, as shown in output produced by cmake:

-- Found MPC: /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/usr/lib64/libmpc.so
-- Found MPFR: /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/usr/lib64/libmpfr.so
-- Found GMP: /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/usr/lib64/libgmp.so

That's fixed by specifying the location of these dependencies explicitly.

Tested updated hooks with EESSI-extend, installing SymEngine-0.14.0-gfbf-2025b.eb works like a charm now...

…found + GMP/MPC/MPFR dependencies are correctly picked up

…s included in RPATH section

boegel · 2026-07-30T10:38:26Z

I'll sync this with main once #274 gets merged before triggering build...

bedroge · 2026-07-30T11:52:54Z

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

eessi-bot-jsc · 2026-07-30T11:53:02Z

New job on instance eessi-bot-jsc for repository eessi.io-2023.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2026.07/pr_275/15481201

date	job status	comment
Jul 30 11:53:00 UTC 2026	submitted	job id `15481201` awaits release by job manager
Jul 30 11:53:28 UTC 2026	released	job awaits launch by Slurm scheduler
Jul 30 12:06:00 UTC 2026	running	job `15481201` is running
Jul 30 12:18:28 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-15481201.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2023.06-software-linux-aarch64-nvidia-grace-17854134180.tar.gz` size: 0 MiB (29887 bytes) entries: 1 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/nvidia/grace/software no software packages in tarball reprod directories under 2023.06/software/linux/aarch64/nvidia/grace/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Jul 30 12:18:28 UTC 2026	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 2/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 3/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 4/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 5/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 6/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 7/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 8/28) Skipping GPU test : only 1 GPU available for this test case [ OK ] ( 9/28) EESSI_LAMMPS_lj %device_type=gpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /1f2ca7c1 @BotBuildTests:aarch64-nvidia-grace+default P: perf: 6980.076 timesteps/s (r:0, l:None, u:None) [ OK ] (10/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64-nvidia-grace+default P: perf: 1498.316 timesteps/s (r:0, l:None, u:None) [ OK ] (11/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64-nvidia-grace+default P: perf: 1548.519 timesteps/s (r:0, l:None, u:None) [ OK ] (12/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /b22a48f5 @BotBuildTests:aarch64-nvidia-grace+default P: perf: 1491.263 timesteps/s (r:0, l:None, u:None) [ OK ] (13/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64-nvidia-grace+default P: latency: 5.14 us (r:0, l:None, u:None) [ OK ] (14/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 5.15 us (r:0, l:None, u:None) [ OK ] (15/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /95ac9526 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 5.77 us (r:0, l:None, u:None) [ OK ] (16/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /1cff5d41 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 5.65 us (r:0, l:None, u:None) [ OK ] (17/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 7.27 us (r:0, l:None, u:None) [ OK ] (18/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 7.21 us (r:0, l:None, u:None) [ OK ] (19/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /0edb8a95 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 10.58 us (r:0, l:None, u:None) [ OK ] (20/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /b2ab2213 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 10.95 us (r:0, l:None, u:None) [ OK ] (21/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 0.51 us (r:0, l:None, u:None) [ OK ] (22/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64-nvidia-grace+default P: latency: 0.47 us (r:0, l:None, u:None) [ OK ] (23/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /8ec94746 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 0.55 us (r:0, l:None, u:None) [ OK ] (24/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /1a3a497b @BotBuildTests:aarch64-nvidia-grace+default P: latency: 0.54 us (r:0, l:None, u:None) [ OK ] (25/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64-nvidia-grace+default P: bandwidth: 43270.8 MB/s (r:0, l:None, u:None) [ OK ] (26/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64-nvidia-grace+default P: bandwidth: 39276.38 MB/s (r:0, l:None, u:None) [ OK ] (27/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /c9ca6dc1 @BotBuildTests:aarch64-nvidia-grace+default P: bandwidth: 41426.59 MB/s (r:0, l:None, u:None) [ OK ] (28/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /17289b2f @BotBuildTests:aarch64-nvidia-grace+default P: bandwidth: 42503.72 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 20/28 test case(s) from 28 check(s) (0 failure(s), 8 skipped, 0 aborted) Details ✅ job output file `slurm-15481201.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 30 13:28:32 UTC 2026	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-nvidia-grace-17854134180.tar.gz` to S3 bucket succeeded

eessi-bot-jsc · 2026-07-30T11:53:08Z

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2026.07/pr_275/15481203

date	job status	comment
Jul 30 11:53:06 UTC 2026	submitted	job id `15481203` awaits release by job manager
Jul 30 11:53:24 UTC 2026	released	job awaits launch by Slurm scheduler
Jul 30 11:54:32 UTC 2026	running	job `15481203` is running
Jul 30 12:04:55 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-15481203.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-nvidia-grace-17854127040.tar.gz` size: 0 MiB (29889 bytes) entries: 1 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all no module files in tarball software under 2025.06/software/linux/aarch64/nvidia/grace/software no software packages in tarball reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod no reprod directories in tarball other under 2025.06/software/linux/aarch64/nvidia/grace no other files in tarball
Jul 30 12:04:55 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite produced failures. ReFrame Summary [ FAILED ] Ran 18/30 test case(s) from 30 check(s) (4 failure(s), 12 skipped, 0 aborted) Details ✅ job output file `slurm-15481203.out` ❌ found message matching `ERROR:` ❌ found message matching `[\sFAILED\s].Ran . test case`
Jul 30 13:28:42 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-nvidia-grace-17854127040.tar.gz` to S3 bucket succeeded

boegel · 2026-07-30T12:52:37Z

@bedroge ready to deploy?

boegel added 2 commits July 30, 2026 12:02

extend configure options for SymEngine to make sure that binutils is …

a2ba727

…found + GMP/MPC/MPFR dependencies are correctly picked up

add path to libbfd.so to $LIBRARY_PATH when building SymEngine so it'…

84924f5

…s included in RPATH section

Merge branch 'main' into SymEngine_deps

072b928

bedroge approved these changes Jul 30, 2026

View reviewed changes

bedroge added the bot:deploy label Jul 30, 2026

bedroge merged commit 9d37790 into EESSI:main Jul 30, 2026
95 of 98 checks passed

boegel deleted the SymEngine_deps branch July 30, 2026 15:18

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extend configure options for SymEngine to make sure that binutils is found + GMP/MPC/MPFR dependencies are correctly picked up - #275

extend configure options for SymEngine to make sure that binutils is found + GMP/MPC/MPFR dependencies are correctly picked up#275
bedroge merged 3 commits into
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boegel:SymEngine_deps

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