Guacamole data locations

Transcriptome assembly data

ℹ️ Data related to wiki(s):

• Transcriptome assembly commands
• Long-read transcript assembly with IsoQuant and StringTie

Backup location:

ls /opt/data/Transcriptome_assembly.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/Transcriptome_assembly.tar.gz* .
tar -zxf Transcriptome_assembly.tar.gz 

Mikado data

ℹ️ Data related to wiki(s):

• Mikado commands

Backup location:

ls /opt/data/Mikado.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/Mikado.tar.gz* .
tar -zxf Mikado.tar.gz 

Reat transcriptome data

ℹ️ Data related to wiki(s):

• REAT transcriptome commands

Backup location:

ls /opt/data/Reat_transcriptome.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/Reat_transcriptome.tar.gz* .
tar -zxf Reat_transcriptome.tar.gz 

Minos data

ℹ️ Data related to wiki(s):

• Minos commands

Backup location:

ls /opt/data/Minos.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/Minos.tar.gz* .
tar -zxf Minos.tar.gz 

Liftover data

ℹ️ Data related to wiki(s):

• Annotation liftover commands

Backup location:

ls /opt/data/Liftover.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/Liftover.tar.gz* .
tar -zxf Liftover.tar.gz 

Tiberius data

ℹ️ Data related to wiki(s):

• Tiberius commands

Backup location:

ls /opt/data/Tiberius.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/Tiberius.tar.gz* .
tar -zxf Tiberius.tar.gz 

Augustus data

ℹ️ Data related to wiki(s):

• Augustus
• Augustus Training (without optimisation)
• Augustus Prediction
• Augustus Extrinsic Configuration and Hints File Formats
• Augustus Training (with optimisation)
• Mikado models to Gold standard models

Backup location:

ls /opt/data/Augustus.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/Augustus.tar.gz* .
tar -zxf Augustus.tar.gz 

EVidenceModeler (EVM) data

ℹ️ Data related to wiki(s):

• EVidenceModeler (EVM) commands

Backup location:

ls /opt/data/EVM.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/EVM.tar.gz* .
tar -zxf EVM.tar.gz 

Helixer data

ℹ️ Data related to wiki(s):

• Helixer commands

Backup location:

ls /opt/data/Helixer.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/Helixer.tar.gz* .
tar -zxf Helixer.tar.gz 

GALBA data

ℹ️ Data related to wiki(s):

• GALBA commands

Backup location:

ls /opt/data/galba.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/galba.tar.gz* .
tar -zxf galba.tar.gz 

BRAKER3 data

ℹ️ Data related to wiki(s):

• BRAKER3 commands

Backup location:

ls /opt/data/braker3.tar.gz*

To copy to Annotation_workshop folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/braker3.tar.gz* .
tar -zxf braker3.tar.gz 

Busco brassicales_odb10 data

ℹ️ Data related to wiki(s):

• Minos commands

Backup location:

ls /opt/data/brassicales_odb10.2019-11-20.tar.gz

To copy to /home/train/data folder:

cd /home/train/Annotation_workshop
cp -a /opt/data/brassicales_odb10.2019-11-20.tar.gz .
tar -zxf brassicales_odb10.2019-11-20.tar.gz